RLG00000036802

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
84764460 .. 84764957
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036802

Sequence Viewer

Length: 498 bp
ATGCAAGATGATGGCAATCTTGTGCTTGTCACCATAAACTTGCCCACTGAGTTTGCCAACGCGCCTTACTATGCAAGTGACACTACCGGTGATTCAAACTCTTCTATTGCTGGTACAAAGCTGGAGTTCAATAGCTCAGGCTACATGTATGTTCTGAGAGAGAACGGCGAGAAACTCACCATCAAAGAAGCAGAGACAGTCTCAGCTAGGAGCTTCTATCTTAGAGCAACCCTCAACTTTGATGGGGTTTTCGCTCAATACTCTCACCCAAGACATTCCTCGGGTAACTGGAGTGTTGTTTGGTCAGTGCCAGATAACATATGCAATATGGAGGTTGCTTCAGGTCTTGGTGTATGTGGCTACAACAGTATCTGCACTCTCCAAGGTCAGAGGCCAACCTGTGCATGCCTAAAAGGATACTCTTTACTGGATCCGAATGATCCGTATGGGCATTGCAAGCCGGATTTCATACAAGGATGTGAAGAAGAGATAAGCTGA

Protein Analysis

166

Amino Acids

18.06

Weight (kDa)

4.61

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 67 - 141 1.4e-07 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 62
AclWI GGATC 3 cut(s) 425, 434, 438
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 144
AgeI ACCGGT 1 cut(s) 86
AgsI TTSAA 2 cut(s) 96, 130
AluBI AGCT 5 cut(s) 121, 135, 206, 213, 495
AluI AGCT 5 cut(s) 121, 135, 206, 213, 495
Alw26I GTCTC 2 cut(s) 188, 205
AlwI GGATC 3 cut(s) 425, 434, 438
AlwNI CAGNNNCTG 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 392
AsiGI ACCGGT 1 cut(s) 86
AspLEI GCGC 1 cut(s) 64
AsuHPI GGTGA 4 cut(s) 22, 101, 169, 257
AvaI CYCGRG 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BamHI GGATCC 1 cut(s) 430
BccI CCATC 3 cut(s) 5, 188, 236
BceAI ACGGC 1 cut(s) 181
BciVI GTATCC 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 188, 205
BfaI CTAG 1 cut(s) 207
BfuI GTATCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 432
BplI GAGNNNNNCTC 4 cut(s) 185, 217, 216, 248
BpmI CTGGAG 2 cut(s) 143, 310
Bpu10I CCTNAGC 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 279, 382
BsaWI WCCGGW 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 293, 432
Bse3DI GCAATG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 279, 382
BseGI GGATG 1 cut(s) 482
BseJI GATNNNNATC 1 cut(s) 15
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 4 cut(s) 39, 146, 150, 216
BseNI ACTGG 2 cut(s) 293, 432
BsgI GTGCAG 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 2 cut(s) 87, 461
BsmAI GTCTC 2 cut(s) 188, 205
BsnI GGCC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 280
Bsp143I GATC 2 cut(s) 430, 439
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 4 cut(s) 40, 147, 149, 215
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 3 cut(s) 425, 434, 438
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 293, 432
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 279, 382
BssMI GATC 2 cut(s) 430, 439
BssT1I CCWWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 199, 368
Bst6I CTCTTC 2 cut(s) 106, 480
BstC8I GCNNGC 2 cut(s) 406, 458
BstDEI CTNAG 5 cut(s) 48, 136, 155, 202, 221
BstF5I GGATG 1 cut(s) 482
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 433, 442
BstMAI GTCTC 2 cut(s) 188, 205
BstMBI GATC 2 cut(s) 430, 439
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNSI RCATGY 2 cut(s) 148, 408
BstUI CGCG 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 482
BtsIMutI CAGTG 2 cut(s) 45, 312
Cac8I GCNNGC 2 cut(s) 406, 458
CaiI CAGNNNCTG 1 cut(s) 372
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 86
Csp6I GTAC 1 cut(s) 114
CspAI ACCGGT 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 2 cut(s) 145, 405
CviJI RGCY 9 cut(s) 121, 135, 141, 206, 213, 360, 394, 460, 495
CviKI_1 RGCY 9 cut(s) 121, 135, 141, 206, 213, 360, 394, 460, 495
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 5 cut(s) 48, 136, 155, 202, 221
DpnI GATC 2 cut(s) 432, 441
DpnII GATC 2 cut(s) 430, 439
Eam1104I CTCTTC 2 cut(s) 106, 480
EarI CTCTTC 2 cut(s) 106, 480
Eco130I CCWWGG 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 2 cut(s) 148, 408
FatI CATG 2 cut(s) 144, 404
FauNDI CATATG 1 cut(s) 320
FokI GGATG 1 cut(s) 489
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 63
GsuI CTGGAG 2 cut(s) 143, 310
HaeIII GGCC 1 cut(s) 394
HapII CCGG 2 cut(s) 87, 461
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 148, 408
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 87, 461
HphI GGTGA 4 cut(s) 22, 101, 169, 257
Hpy188I TCNGA 3 cut(s) 156, 390, 435
HpyCH4III ACNGT 2 cut(s) 199, 368
HpyCH4V TGCA 6 cut(s) 4, 74, 324, 375, 404, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 5 cut(s) 48, 136, 155, 202, 221
Hsp92II CATG 2 cut(s) 148, 408
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 430, 439
LmnI GCTCC 1 cut(s) 210
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 28, 77, 284
MalI GATC 2 cut(s) 432, 441
MboI GATC 2 cut(s) 430, 439
MboII GAAGA 3 cut(s) 93, 494, 497
MflI RGATCY 1 cut(s) 430
MnlI CCTC 4 cut(s) 242, 289, 325, 384
MspI CCGG 2 cut(s) 87, 461
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeI CATATG 1 cut(s) 320
NdeII GATC 2 cut(s) 430, 439
NlaIII CATG 2 cut(s) 148, 408
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 2 cut(s) 28, 77
NspI RCATGY 2 cut(s) 148, 408
PaeI GCATGC 1 cut(s) 408
PciI ACATGT 1 cut(s) 144
PfeI GAWTC 1 cut(s) 92
PinAI ACCGGT 1 cut(s) 86
PscI ACATGT 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 430, 439
SetI ASST 9 cut(s) 123, 137, 208, 215, 336, 346, 388, 401, 497
SphI GCATGC 1 cut(s) 408
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 199, 368
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 2 cut(s) 52, 312
TseFI GTSAC 2 cut(s) 28, 77
Tsp45I GTSAC 2 cut(s) 28, 77
TspDTI ATGAA 1 cut(s) 457
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 2 cut(s) 52, 312
XceI RCATGY 2 cut(s) 148, 408
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.