RchiOBHm_Chr5g0078641

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84471378 .. 84473441
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35315

Sequence Viewer

Length: 342 bp
ATGGCAATGGCTTTTACTGTATGGTTGCTTTTGCTTTCCTTATTGTTTCTCCTACCAGTTTCTGTGTTGTCCCAAACTAATGGTAGCATAGTAGTGGGTGCTTCTCTCTCTGCAGCAGGCAACTCCTCATGGATTTCTCCATCTGGTGAATTTGCTTTTGGATTTCAGCGACTTGAAAACAATGATCGTTTCTTGCTTTCTATATGGTTTGCCAAGATACCCGACAGAACCATAGTTTGGTATGCAAATGGAGATAGGCCTGCACCTAAGGGATCAATTGTGAACTTGACTGCAAACAGTGGATTACTGCTCACAAGTCCTCAGGGTGAAGAGCTATGGTGA

Protein Analysis

113

Amino Acids

12.27

Weight (kDa)

5.1

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 220, 252
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 158, 338
AxyI CCTNAGG 2 cut(s) 267, 321
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 56
Bse21I CCTNAGG 2 cut(s) 267, 321
Bse3DI GCAATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 259
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 184, 272
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 56
BssMI GATC 2 cut(s) 184, 272
Bst4CI ACNGT 2 cut(s) 19, 299
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 118, 261
BstDEI CTNAG 2 cut(s) 267, 321
BstKTI GATC 2 cut(s) 187, 275
BstMBI GATC 2 cut(s) 184, 272
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 80
Bsu36I CCTNAGG 2 cut(s) 267, 321
BsuRI GGCC 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 118, 261
CaiI CAGNNNCTG 1 cut(s) 62
CviAII CATG 1 cut(s) 129
CviJI RGCY 3 cut(s) 11, 259, 334
CviKI_1 RGCY 3 cut(s) 11, 259, 334
DdeI CTNAG 2 cut(s) 267, 321
DpnI GATC 2 cut(s) 186, 274
DpnII GATC 2 cut(s) 184, 272
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 259
Eco81I CCTNAGG 2 cut(s) 267, 321
FaeI CATG 1 cut(s) 132
FaiI YATR 8 cut(s) 22, 89, 130, 203, 205, 233, 243, 337
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 259
Hin1II CATG 1 cut(s) 132
HphI GGTGA 2 cut(s) 158, 338
Hpy166II GTNNAC 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 19, 299
HpyCH4V TGCA 4 cut(s) 113, 245, 263, 293
HpyF3I CTNAG 2 cut(s) 267, 321
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 2 cut(s) 184, 272
LguI GCTCTTC 1 cut(s) 324
LpnPI CCDG 5 cut(s) 69, 102, 129, 273, 308
Lsp1109I GCAGC 1 cut(s) 125
MalI GATC 2 cut(s) 186, 274
MboI GATC 2 cut(s) 184, 272
MboII GAAGA 1 cut(s) 341
MfeI CAATTG 1 cut(s) 276
MluCI AATT 2 cut(s) 149, 276
MnlI CCTC 2 cut(s) 136, 330
MslI CAYNNNNRTG 1 cut(s) 92
MunI CAATTG 1 cut(s) 276
NdeII GATC 2 cut(s) 184, 272
NlaIII CATG 1 cut(s) 132
PceI AGGCCT 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 324
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 324
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 184, 272
SetI ASST 2 cut(s) 268, 336
SfcI CTRYAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 2 cut(s) 149, 276
SseBI AGGCCT 1 cut(s) 259
StuI AGGCCT 1 cut(s) 259
TaaI ACNGT 2 cut(s) 19, 299
TasI AATT 2 cut(s) 149, 276
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 113
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.