Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8225446.1

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

68 .. 719

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8225446.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaattcgggtcctggtatttgtggttacaacagtatctgcactctcaaagcagataggaggccatcctgtgaatgcctaacaggatactctttacttgatccagcagatgcatacgggaactgttatccagattccaaacaaggctgtgaagatgagcttagttatacaaaagatctatatgatgttcaggtgcgagcaaatactgattggcttacctccagttatgtgcagttaaatgcttctactgctgacacatgcagtcaatcttgcttggaagattgtttgtgtgctgttgctgtttacggcaatgaaacctgttggaaaaagaagtttccactctcatatgggagagaagacagcacccttaatgcaaagaccttcatcaaattcaggaacgacacttcagctctacaagttccggatgataagaagaagagccagaccactagggtacgtttgttgtcagttcttctgagcacctctgtctttgtcagaaggagcttgaagaagctacaaatggattccatgaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

179

Amino Acids

19.99

Weight (kDa)

7.95

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	421
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	4, 389
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	160, 410, 504, 514
AluI	AGCT	4 cut(s)	160, 410, 504, 514
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	39
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	4, 389
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BaeI	ACNNNNGTAYC	4 cut(s)	19, 52, 446, 479
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	482
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	450, 538
BfuI	GTATCC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	65, 430
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	222
BsgI	GTGCAG	2 cut(s)	25, 251
BshFI	GGCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	100, 175
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	100, 175
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	35, 125
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	161, 476
BstF5I	GGATG	2 cut(s)	65, 430
BstKTI	GATC	2 cut(s)	103, 178
BstMBI	GATC	2 cut(s)	100, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	65, 430
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	2 cut(s)	258, 529
CviJI	RGCY	8 cut(s)	64, 147, 160, 214, 410, 441, 504, 514
CviKI_1	RGCY	8 cut(s)	64, 147, 160, 214, 410, 441, 504, 514
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	161, 476
DpnI	GATC	2 cut(s)	102, 177
DpnII	GATC	2 cut(s)	100, 175
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	115
FaeI	CATG	2 cut(s)	261, 532
FaiI	YATR	9 cut(s)	115, 168, 181, 183, 228, 259, 346, 348, 530
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	2 cut(s)	257, 528
FauNDI	CATATG	1 cut(s)	346
FokI	GGATG	2 cut(s)	52, 437
FspBI	CTAG	2 cut(s)	450, 538
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	2 cut(s)	261, 532
HinfI	GANTC	2 cut(s)	134, 524
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	477, 497
Hpy188III	TCNNGA	3 cut(s)	131, 394, 422
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	391, 492
HpyCH4III	ACNGT	2 cut(s)	35, 125
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	5 cut(s)	42, 113, 232, 261, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	161, 476
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	2 cut(s)	261, 532
Kpn2I	TCCGGA	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	100, 175
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	1 cut(s)	501
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	450, 538
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	102, 177
MboI	GATC	2 cut(s)	100, 175
MboII	GAAGA	7 cut(s)	164, 290, 368, 445, 448, 464, 520
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	2 cut(s)	4, 389
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	54, 229, 493
Mph1103I	ATGCAT	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	421
MseI	TTAA	2 cut(s)	236, 369
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	100, 175
NlaIII	CATG	2 cut(s)	261, 532
NlaIV	GGNNCC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	431
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	134, 524
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	236, 369
Sau3AI	GATC	2 cut(s)	100, 175
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	4, 389
SspMI	CTAG	2 cut(s)	450, 538
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	35, 125
TaiI	ACGT	1 cut(s)	460
TasI	AATT	2 cut(s)	4, 389
TfiI	GAWTC	2 cut(s)	134, 524
Tru1I	TTAA	2 cut(s)	236, 369
Tru9I	TTAA	2 cut(s)	236, 369
TspDTI	ATGAA	3 cut(s)	17, 327, 373
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	4, 389
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	2 cut(s)	450, 538
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.