Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

83028341 .. 83032564

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATATTAGCCGATTGGGCATACAATTGCTATGAGCAAAAGAATTTGCATCTATTGTTGCAGAATGTCAGGGACGAGCAGGCAATGGATGGCATCAAGGAGTTGGAGAAGTACTTGATGATAGCATTTTGGTGCATCCAAGAGGATCCATCAGTAAGATCTACCATAAAGAAAGTGATACAGATGCTTGAAGGCACTGTTGAAGTCTCAGTGCCTCCAATGAATCCCTCATTATATGTTCAATCTAAGCACGAGTCAAAGTTCATCCAAAAGATTGTTACAGTGATTCAAGAAAAGCGAGATCAAGTGGTTGATTCTCTCTCCGCAACTGCAGATCACAACTACTCCTCATTGCTTTCTCCTTCTGGTGATTTTGCCTTTGGATTTCGCCAACTTGAAAACAGTGAGAATTTCTTGCTTTCTATATGGTTTGCCAAGATAACAGACAGAACCATTGTTTGGTACGCAAATGGAGATAGGCCTGCACCCAAGGGATCAATTGTGAACTTGACTTCCAGCAGTGGATTAGTGCTTACAACTCCACAGGGTGAACAGCTATGGAAGTCTGATCTAACCATTGCTGGTGTTGTTGCTTATGGGGATATGAATGATAACGGTAACTTTATTCTGAAAGATAAGAAGTCAGAAAAGTTATGGGAGACATTCAAGAATCCTACTGATACCATGTTGCCTGGGCAGATAATAGAAAGAGGAGGGAGACTTTCTTCTCGACAATCAGAGACTAACTACGCAAGAGGACGCTTCCTGATAGATTTTCAAGAAGATGGGAATCTTGTGTTTAGTGCCAAAAAACCTTTTCATTCTACTAAAACTACAACGGGGACTGTTCCAGGTAGTGAAGGTAAACAGTTGGTTTTCGATGACTCTGGCGACTTCTATATTCTGCGAGAGAATCGTGGAAAATTCACTTTCACAGCAGAGGGACGCCCAGCAGGGGACTACTATTTCCGGTCAACTCTCAACTTTGATGGGGTTTTGGTTCAATATTTTCTCCCAAAGTCTTCTGTTGACACTGTAAGCTGGAAACCACTTTGGTCAGAACCAAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

357

Amino Acids

40.43

Weight (kDa)

5.57

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	151 - 236	6.2e-14	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	3 cut(s)	140, 153, 502
AcsI	RAATTY	3 cut(s)	43, 409, 923
AcyI	GRCGYC	1 cut(s)	946
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	113, 464
AfiI	CCNNNNNNNGG	2 cut(s)	459, 955
AgsI	TTSAA	8 cut(s)	191, 203, 242, 290, 398, 667, 779, 1004
AjnI	CCWGG	2 cut(s)	691, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	2 cut(s)	556, 1041
AluI	AGCT	2 cut(s)	556, 1041
Alw26I	GTCTC	4 cut(s)	211, 653, 712, 734
AlwI	GGATC	3 cut(s)	140, 153, 502
AoxI	GGCC	1 cut(s)	479
ApoI	RAATTY	3 cut(s)	43, 409, 923
AsuHPI	GGTGA	2 cut(s)	380, 560
BamHI	GGATCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	1014
BccI	CCATC	4 cut(s)	83, 157, 779, 983
BciT130I	CCWGG	2 cut(s)	693, 852
BcoDI	GTCTC	4 cut(s)	211, 653, 712, 734
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	693, 852
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	693, 852
BmsI	GCATC	4 cut(s)	58, 102, 144, 174
BpiI	GAAGAC	1 cut(s)	1014
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	946
BsaJI	CCNNGG	2 cut(s)	489, 692
BsaWI	WCCGGW	1 cut(s)	969
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 955
Bse3DI	GCAATG	3 cut(s)	90, 350, 576
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	693, 852
BseDI	CCNNGG	2 cut(s)	489, 692
BseGI	GGATG	3 cut(s)	94, 135, 264
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	2 cut(s)	459, 955
BseMI	GCAATG	3 cut(s)	90, 350, 576
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	337, 726
BseYI	CCCAGC	1 cut(s)	949
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	970
BslFI	GGGAC	4 cut(s)	86, 856, 957, 971
BslI	CCNNNNNNNGG	2 cut(s)	459, 955
BsmAI	GTCTC	4 cut(s)	211, 653, 712, 734
BsmFI	GGGAC	4 cut(s)	86, 856, 957, 971
BsnI	GGCC	1 cut(s)	481
Bsp143I	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	3 cut(s)	140, 153, 502
BsrDI	GCAATG	3 cut(s)	90, 350, 576
BssECI	CCNNGG	2 cut(s)	489, 692
BssMI	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
BssNI	GRCGYC	1 cut(s)	946
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	693, 852
Bst4CI	ACNGT	7 cut(s)	199, 283, 404, 617, 847, 870, 1036
BstACI	GRCGYC	1 cut(s)	946
BstC8I	GCNNGC	2 cut(s)	81, 483
BstDEI	CTNAG	2 cut(s)	208, 246
BstF5I	GGATG	3 cut(s)	94, 135, 264
BstKTI	GATC	6 cut(s)	148, 161, 304, 337, 497, 571
BstMAI	GTCTC	4 cut(s)	211, 653, 712, 734
BstMBI	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	2 cut(s)	693, 852
BstSCI	CCNGG	2 cut(s)	691, 850
BstSFI	CTRYAG	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	1014
BstX2I	RGATCY	2 cut(s)	145, 158
BstYI	RGATCY	2 cut(s)	145, 158
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	94, 135, 264
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	6 cut(s)	195, 216, 288, 409, 526, 1032
Cac8I	GCNNGC	2 cut(s)	81, 483
CseI	GACGC	2 cut(s)	768, 954
Csp6I	GTAC	2 cut(s)	112, 463
CviAII	CATG	1 cut(s)	685
CviJI	RGCY	4 cut(s)	11, 481, 556, 1041
CviKI_1	RGCY	4 cut(s)	11, 481, 556, 1041
CviQI	GTAC	2 cut(s)	112, 463
DdeI	CTNAG	2 cut(s)	208, 246
DpnI	GATC	6 cut(s)	147, 160, 303, 336, 496, 570
DpnII	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
DraIII	CACNNNGTG	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	691, 850
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	1 cut(s)	688
FaqI	GGGAC	4 cut(s)	86, 856, 957, 971
FatI	CATG	1 cut(s)	684
FokI	GGATG	3 cut(s)	101, 122, 251
GsaI	CCCAGC	1 cut(s)	953
HaeIII	GGCC	1 cut(s)	481
HapII	CCGG	1 cut(s)	970
HgaI	GACGC	2 cut(s)	768, 954
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	1 cut(s)	688
HincII	GTYRAC	2 cut(s)	975, 1030
HindII	GTYRAC	2 cut(s)	975, 1030
HinfI	GANTC	8 cut(s)	223, 254, 286, 314, 670, 790, 884, 913
HpaII	CCGG	1 cut(s)	970
HphI	GGTGA	2 cut(s)	380, 560
Hpy166II	GTNNAC	5 cut(s)	505, 551, 866, 975, 1030
Hpy188I	TCNGA	5 cut(s)	568, 630, 646, 739, 1060
Hpy188III	TCNNGA	5 cut(s)	290, 667, 729, 766, 779
Hpy8I	GTNNAC	5 cut(s)	505, 551, 866, 975, 1030
HpyAV	CCTTC	3 cut(s)	185, 372, 854
HpyCH4III	ACNGT	7 cut(s)	199, 283, 404, 617, 847, 870, 1036
HpyCH4V	TGCA	5 cut(s)	49, 61, 135, 332, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	208, 246
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	1 cut(s)	688
Kzo9I	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
LweI	GCATC	4 cut(s)	58, 102, 144, 174
MaeIII	GTNAC	2 cut(s)	277, 617
MalI	GATC	6 cut(s)	147, 160, 303, 336, 496, 570
MboI	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
MboII	GAAGA	3 cut(s)	717, 794, 1014
MfeI	CAATTG	2 cut(s)	25, 498
MflI	RGATCY	2 cut(s)	145, 158
MluCI	AATT	6 cut(s)	25, 43, 409, 498, 923, 1069
MlyI	GAGTC	2 cut(s)	263, 878
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	136, 225, 238, 358, 704, 707, 749, 934
MseI	TTAA	1 cut(s)	1072
MslI	CAYNNNNRTG	1 cut(s)	130
MspI	CCGG	1 cut(s)	970
MspR9I	CCNGG	2 cut(s)	693, 852
MunI	CAATTG	2 cut(s)	25, 498
MvaI	CCWGG	2 cut(s)	693, 852
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	481
PfeI	GAWTC	6 cut(s)	223, 286, 314, 670, 790, 913
PflMI	CCANNNNNTGG	1 cut(s)	459
PleI	GAGTC	2 cut(s)	262, 878
PpsI	GAGTC	2 cut(s)	262, 878
Psp6I	CCWGG	2 cut(s)	691, 850
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	2 cut(s)	691, 850
PspN4I	GGNNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	145, 158
RsaI	GTAC	2 cut(s)	113, 464
RsaNI	GTAC	2 cut(s)	112, 463
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	1072
Sau3AI	GATC	6 cut(s)	145, 158, 301, 334, 494, 568
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	2 cut(s)	263, 878
ScrFI	CCNGG	2 cut(s)	693, 852
SetI	ASST	5 cut(s)	558, 817, 856, 865, 1043
SfaNI	GCATC	4 cut(s)	58, 102, 144, 174
SfcI	CTRYAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	130
Sse9I	AATT	6 cut(s)	25, 43, 409, 498, 923, 1069
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	1007
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	2 cut(s)	691, 850
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	7 cut(s)	199, 283, 404, 617, 847, 870, 1036
TaqI	TCGA	2 cut(s)	730, 879
TasI	AATT	6 cut(s)	25, 43, 409, 498, 923, 1069
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	6 cut(s)	223, 286, 314, 670, 790, 913
Tru1I	TTAA	1 cut(s)	1072
Tru9I	TTAA	1 cut(s)	1072
TscAI	CASTG	6 cut(s)	202, 216, 288, 409, 526, 1039
TspDTI	ATGAA	4 cut(s)	236, 253, 620, 809
TspRI	CASTG	6 cut(s)	202, 216, 288, 409, 526, 1039
Van91I	CCANNNNNTGG	1 cut(s)	459
XapI	RAATTY	3 cut(s)	43, 409, 923
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.