Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012487.1

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

43989 .. 44993

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012487.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgtttagtgctatagtttgtatgggatttttcttcatttaccggaagaaacatgtgaggcctaaccataatgttttggactcgaatttgcgctcttttagttatgaagagcttaaagaagcaacaaatggatttaatgaagaattaggaaagggtccttttggagttgtttacaaaggaatattgcaaattggttctggtgtccccgtggcagtgaagaagctaaaatttgtggtacaagatagtgagaaggaattcaagacggacctgaacataattggtcaaacacatcacaagaatctggttagacttgttggatattgtgacgagggacaagagcggattgatattgcttatggagttgcgaaaggacttctgtacttacatgaagagtgcagaacccagatcatccattgtgacattaagcctcagaacattcttctagatgatcactacactgctcagatagctgactttggattggcaaagcttttaatgatgaatcagagccagactcaaactgccataagaggaacaaaagggagaagcgttgatagggaaaatgtttccgaagagagagccattttaacagattgggtctatgactgcaaccacgatggagtcttggatgcgattgttgacaacgaaatggaggccttgcatgagaaaacaaagctagaacggtttgtcatggttgctccttggtgtattcaagaagacccttctcttcgacccactatgaggaaggttgtgcggatgcttgaaggagtagtggatgtacatgttccaccatgtccatcacctttcagcagagcaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

273

Amino Acids

30.98

Weight (kDa)

6.21

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	340
AciI	CCGC	2 cut(s)	340, 754
AcsI	RAATTY	3 cut(s)	85, 227, 254
AfaI	GTAC	3 cut(s)	237, 380, 780
AfiI	CCNNNNNNNGG	1 cut(s)	741
AflIII	ACRYGT	2 cut(s)	52, 781
AgsI	TTSAA	3 cut(s)	259, 713, 764
AluBI	AGCT	5 cut(s)	112, 223, 470, 490, 676
AluI	AGCT	5 cut(s)	112, 223, 470, 490, 676
AoxI	GGCC	2 cut(s)	59, 654
ApoI	RAATTY	3 cut(s)	85, 227, 254
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	155, 265
AsuHPI	GGTGA	1 cut(s)	792
AvaII	GGWCC	2 cut(s)	155, 265
BbsI	GAAGAC	1 cut(s)	723
BccI	CCATC	2 cut(s)	611, 805
BclI	TGATCA	1 cut(s)	448
BfaI	CTAG	2 cut(s)	443, 677
BfmI	CTRYAG	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	155, 265
BmgT120I	GGNCC	2 cut(s)	155, 265
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	2 cut(s)	619, 747
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BsaJI	CCNNGG	2 cut(s)	207, 701
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	207, 701
BseGI	GGATG	4 cut(s)	408, 634, 762, 781
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMII	CTCAG	2 cut(s)	443, 476
BsgI	GTGCAG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	61, 656
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	188, 345
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmFI	GGGAC	2 cut(s)	188, 345
BsnI	GGCC	2 cut(s)	61, 656
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	405, 448
BspACI	CCGC	2 cut(s)	340, 754
BspANI	GGCC	2 cut(s)	61, 656
BspCNI	CTCAG	2 cut(s)	442, 475
BspLI	GGNNCC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	778
BssECI	CCNNGG	2 cut(s)	207, 701
BssMI	GATC	2 cut(s)	405, 448
BssT1I	CCWWGG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	684
Bst6I	CTCTTC	4 cut(s)	102, 384, 567, 732
BstAUI	TGTACA	1 cut(s)	778
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	2 cut(s)	429, 462
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	408, 634, 762, 781
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	408, 451
BstMBI	GATC	2 cut(s)	405, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 816
BstNSI	RCATGY	2 cut(s)	56, 785
BstSFI	CTRYAG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	723
BsuRI	GGCC	2 cut(s)	61, 656
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	408, 634, 762, 781
BtsI	GCAGTG	2 cut(s)	219, 456
BtsIMutI	CAGTG	2 cut(s)	219, 456
Cac8I	GCNNGC	1 cut(s)	817
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	155, 265
Csp6I	GTAC	3 cut(s)	236, 379, 779
CviAII	CATG	6 cut(s)	53, 386, 662, 691, 782, 792
CviQI	GTAC	3 cut(s)	236, 379, 779
DdeI	CTNAG	2 cut(s)	429, 462
DpnI	GATC	2 cut(s)	407, 450
DpnII	GATC	2 cut(s)	405, 448
Eam1104I	CTCTTC	4 cut(s)	102, 384, 567, 732
EarI	CTCTTC	4 cut(s)	102, 384, 567, 732
Eco130I	CCWWGG	1 cut(s)	701
Eco147I	AGGCCT	2 cut(s)	61, 656
Eco47I	GGWCC	2 cut(s)	155, 265
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	701
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	6 cut(s)	56, 389, 665, 694, 785, 795
FaqI	GGGAC	2 cut(s)	188, 345
FatI	CATG	6 cut(s)	52, 385, 661, 690, 781, 791
FbaI	TGATCA	1 cut(s)	448
FokI	GGATG	4 cut(s)	395, 641, 769, 788
FspBI	CTAG	2 cut(s)	443, 677
GlaI	GCGC	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	61, 656
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	56, 389, 665, 694, 785, 795
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	80, 298, 502, 514, 621
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	792
Hpy166II	GTNNAC	2 cut(s)	172, 640
Hpy188I	TCNGA	4 cut(s)	432, 465, 507, 571
Hpy188III	TCNNGA	3 cut(s)	259, 443, 713
Hpy8I	GTNNAC	2 cut(s)	172, 640
HpyAV	CCTTC	4 cut(s)	244, 732, 739, 758
HpyCH4III	ACNGT	1 cut(s)	684
HpyCH4V	TGCA	4 cut(s)	187, 396, 609, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 816
HpyF3I	CTNAG	2 cut(s)	429, 462
Hsp92II	CATG	6 cut(s)	56, 389, 665, 694, 785, 795
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	405, 448
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	703
LpnPI	CCDG	7 cut(s)	56, 183, 281, 287, 416, 524, 801
LweI	GCATC	2 cut(s)	619, 747
MaeI	CTAG	2 cut(s)	443, 677
MaeIII	GTNAC	2 cut(s)	323, 416
MalI	GATC	2 cut(s)	407, 450
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	2 cut(s)	405, 448
MluCI	AATT	6 cut(s)	85, 143, 189, 227, 254, 276
MlyI	GAGTC	3 cut(s)	74, 508, 630
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	51, 322, 438, 524, 646, 735
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	5 cut(s)	114, 135, 423, 494, 587
MspI	CCGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	467, 816
NdeII	GATC	2 cut(s)	405, 448
NlaIII	CATG	6 cut(s)	56, 389, 665, 694, 785, 795
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	323, 416
NspI	RCATGY	2 cut(s)	56, 785
PceI	AGGCCT	2 cut(s)	61, 656
PciI	ACATGT	2 cut(s)	52, 781
PciSI	GCTCTTC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	298, 502
PleI	GAGTC	3 cut(s)	74, 508, 629
PpsI	GAGTC	3 cut(s)	74, 508, 629
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	2 cut(s)	52, 781
Psp5II	RGGWCCY	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	155, 265
PspPPI	RGGWCCY	1 cut(s)	155
RsaI	GTAC	3 cut(s)	237, 380, 780
RsaNI	GTAC	3 cut(s)	236, 379, 779
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	5 cut(s)	114, 135, 423, 494, 587
Sau3AI	GATC	2 cut(s)	405, 448
Sau96I	GGNCC	2 cut(s)	155, 265
SchI	GAGTC	3 cut(s)	74, 508, 630
SetI	ASST	8 cut(s)	114, 225, 270, 472, 492, 678, 750, 805
SfaNI	GCATC	2 cut(s)	619, 747
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	155, 265
Sse9I	AATT	6 cut(s)	85, 143, 189, 227, 254, 276
SseBI	AGGCCT	2 cut(s)	61, 656
SsiI	CCGC	2 cut(s)	340, 754
SspI	AATATT	1 cut(s)	183
SspMI	CTAG	2 cut(s)	443, 677
StuI	AGGCCT	2 cut(s)	61, 656
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	1 cut(s)	684
TaqI	TCGA	2 cut(s)	83, 730
TasI	AATT	6 cut(s)	85, 143, 189, 227, 254, 276
TatI	WGTACW	2 cut(s)	378, 778
TfiI	GAWTC	2 cut(s)	298, 502
Tru1I	TTAA	5 cut(s)	114, 135, 423, 494, 587
Tru9I	TTAA	5 cut(s)	114, 135, 423, 494, 587
TscAI	CASTG	2 cut(s)	219, 463
TseFI	GTSAC	2 cut(s)	323, 416
Tsp45I	GTSAC	2 cut(s)	323, 416
TspDTI	ATGAA	5 cut(s)	25, 120, 153, 402, 515
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	219, 463
VpaK11BI	GGWCC	2 cut(s)	155, 265
XapI	RAATTY	3 cut(s)	85, 227, 254
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	2 cut(s)	56, 785
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	443, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.