Rorug05G0461700

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
63603758 .. 63604763
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0461700.1

Sequence Viewer

Length: 231 bp
ATGGGATCTGGTGCTGGAAGTTTCCTCAAAGTTCTCCTTAAAAACTTCGATGTTCTTGCTGGGTATGCCTCAATTCGGGTTATAGAGACCAAATCACCAACTGATGATCGCCAATGGCTTACGTATTGGATTCTCTACTTTATGATTACACTCTTTGAGCTCACTTTTGCCAAACTTATTGAGTGGCCAAATAAAGGAGGTCCTTCTAAGCTACACTCAAAGTTCATTTGA

Protein Analysis

76

Amino Acids

8.7

Weight (kDa)

9.4

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 21 - 62 2e-11 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 75, 194
AluBI AGCT 2 cut(s) 160, 211
AluI AGCT 2 cut(s) 160, 211
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 187
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 194
BseLI CCNNNNNNNGG 2 cut(s) 75, 194
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 75, 194
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 5, 106
BspANI GGCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 80
BssMI GATC 2 cut(s) 5, 106
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 2 cut(s) 8, 109
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 5, 106
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 200
CviJI RGCY 4 cut(s) 118, 160, 187, 211
CviKI_1 RGCY 4 cut(s) 118, 160, 187, 211
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 7, 108
DpnII GATC 2 cut(s) 5, 106
EaeI YGGCCR 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 160
Eco105I TACGTA 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 162
FaiI YATR 3 cut(s) 66, 83, 143
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FriOI GRGCYC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 187
HinfI GANTC 1 cut(s) 130
HphI GGTGA 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 122
Kzo9I GATC 2 cut(s) 5, 106
LpnPI CCDG 1 cut(s) 45
MaeII ACGT 1 cut(s) 122
MalI GATC 2 cut(s) 7, 108
MboI GATC 2 cut(s) 5, 106
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 187
MnlI CCTC 3 cut(s) 35, 79, 191
Mox20I TGGCCA 1 cut(s) 187
MscI TGGCCA 1 cut(s) 187
MseI TTAA 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 5, 106
PfeI GAWTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PsuI RGATCY 1 cut(s) 5
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 2 cut(s) 5, 106
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 162
SetI ASST 4 cut(s) 125, 162, 202, 213
SgeI CNNG 5 cut(s) 21, 27, 68, 72, 89
SinI GGWCC 1 cut(s) 200
SnaBI TACGTA 1 cut(s) 123
Sse9I AATT 1 cut(s) 72
SstI GAGCTC 1 cut(s) 162
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 72
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.