Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004277.1

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

554 .. 868

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004277.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtggcaactgaatggttcaaagatacctatcacagtaaaggtggatgtttacagctacggcattttgttattagagattatttgcggcagaaatcattttaaagaacatgctgagaatgaagataatatgatactagctgattcggcctatgattgctacaaacaaatgaaattgcatctgttagtagagaacgatcatgaggcgatgaacaacgtcacaaatgtggagaaatacgtgatgatcgcattgtggtgcattcaagaggacccaacacttagacccaccatgaagaaagtcataactgatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

104

Amino Acids

12.07

Weight (kDa)

5.22

Isoelectric Point (pI)

19.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	21, 263
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	57, 140
AluI	AGCT	2 cut(s)	57, 140
AoxI	GGCC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	2 cut(s)	187, 298
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	29
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	196, 243
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	270
BssMI	GATC	2 cut(s)	196, 243
Bst4CI	ACNGT	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	114, 278
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	199, 246
BstMBI	GATC	2 cut(s)	196, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	3 cut(s)	110, 200, 289
CviJI	RGCY	3 cut(s)	57, 140, 149
CviKI_1	RGCY	3 cut(s)	57, 140, 149
DdeI	CTNAG	2 cut(s)	114, 278
DpnI	GATC	2 cut(s)	198, 245
DpnII	GATC	2 cut(s)	196, 243
DraI	TTTAAA	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	268
FaeI	CATG	3 cut(s)	113, 203, 292
FaiI	YATR	6 cut(s)	111, 131, 153, 201, 290, 302
FatI	CATG	3 cut(s)	109, 199, 288
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	113, 203, 292
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	200, 263
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	216, 237
HpyCH4V	TGCA	2 cut(s)	178, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	114, 278
HpySE526I	ACGT	2 cut(s)	216, 237
Hsp92II	CATG	3 cut(s)	113, 203, 292
Kzo9I	GATC	2 cut(s)	196, 243
LweI	GCATC	2 cut(s)	187, 298
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	216, 237
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	198, 245
MboI	GATC	2 cut(s)	196, 243
MboII	GAAGA	2 cut(s)	134, 304
MluCI	AATT	1 cut(s)	173
MnlI	CCTC	2 cut(s)	196, 259
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	224, 253
Mva1269I	GAATGC	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	2 cut(s)	196, 243
NlaIII	CATG	3 cut(s)	113, 203, 292
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	199
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	268
PspPPI	RGGWCCY	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	224, 253
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	196, 243
Sau96I	GGNCC	1 cut(s)	268
SetI	ASST	6 cut(s)	31, 45, 59, 142, 219, 240
SfaNI	GCATC	2 cut(s)	187, 298
SgeI	CNNG	6 cut(s)	122, 149, 212, 250, 275, 301
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	224, 253
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	2 cut(s)	219, 240
TasI	AATT	1 cut(s)	173
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	135, 185, 224, 305
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.