Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

83289351 .. 83289944

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G048010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTATGTTCTGAGAGAGAACGGCGAAAAATCCTCCATCAAAGAAGCAGAGACAGTCTCAGCTTGGAGCTTCTATCTTAGAGCAACCCTCAACTTTGATGGGGTTTTTGCTCAATACTCTCACCCGAGAGATGCCTCTGGTAACTGGAGTGTTGTTTGGTCAGTGCCAGATAACATATGCACTATGGAGGTTGCTTCAGGTCTTGGTGTATGTGGCAACAACAGTATCTGCACTCTCCAAGATCAGAGGCCAACCTGTGAATGCCCACCAGGATACTCTTTATTGGATTCGAATGATCCGAATGGCAACTGCAAACCGGGTTTTGTACCAAGTTGTGAAGATGAGCTTAACTCCACAACTGATATATATGAAGTTCAAATGCTGACCAATACAGATTGGCCAACCTCAGATTTTATGCGGTTAAATCCTTCTACTCCTGAGAGTTGCAATCAATCTTGCTTTGAAGATTGTTTGTGTGTTGTTGCTTTTTACATGGTTGAAACTTGTTGGAAAAGAAGTTACCTCTTTCAGGTGGGAGAGTGGATAGCGGGCTTAATTCAACGGCCTGTATCAAAGTCAGGAAGGGTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

197

Amino Acids

22.01

Weight (kDa)

4.43

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	418, 548
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	377, 464, 500, 560
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	62, 69, 346
AluI	AGCT	3 cut(s)	62, 69, 346
Alw26I	GTCTC	2 cut(s)	44, 61
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	3 cut(s)	248, 398, 563
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BalI	TGGCCA	1 cut(s)	400
BccI	CCATC	2 cut(s)	44, 92
BceAI	ACGGC	2 cut(s)	37, 578
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	44, 61
BfuI	GTATCC	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	270, 318
BmeT110I	CYCGRG	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	270, 318
BmsI	GCATC	1 cut(s)	121
BplI	GAGNNNNNCTC	6 cut(s)	41, 73, 72, 104, 335, 367
BpmI	CTGGAG	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	72, 420, 429
BseNI	ACTGG	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	250, 400, 565
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	2 cut(s)	44, 61
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	250, 400, 565
BsoBI	CYCGRG	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	241, 295
BspACI	CCGC	2 cut(s)	418, 548
BspANI	GGCC	3 cut(s)	250, 400, 565
BspCNI	CTCAG	3 cut(s)	71, 419, 430
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	241, 295
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	55, 224
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	5 cut(s)	11, 58, 77, 406, 438
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstKTI	GATC	2 cut(s)	244, 298
BstMAI	GTCTC	2 cut(s)	44, 61
BstMBI	GATC	2 cut(s)	241, 295
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	268, 316
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	250, 400, 565
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	7 cut(s)	62, 69, 250, 346, 400, 552, 565
CviKI_1	RGCY	7 cut(s)	62, 69, 250, 346, 400, 552, 565
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	5 cut(s)	11, 58, 77, 406, 438
DpnI	GATC	2 cut(s)	243, 297
DpnII	GATC	2 cut(s)	241, 295
EaeI	YGGCCR	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	496
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	1 cut(s)	492
FauI	CCCGC	1 cut(s)	541
FauNDI	CATATG	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	250, 400, 565
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	12, 246, 300, 409
Hpy188III	TCNNGA	2 cut(s)	437, 579
HpyAV	CCTTC	2 cut(s)	438, 576
HpyCH4III	ACNGT	2 cut(s)	55, 224
HpyCH4V	TGCA	4 cut(s)	180, 231, 312, 447
HpyF3I	CTNAG	5 cut(s)	11, 58, 77, 406, 438
Hsp92II	CATG	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	241, 295
LmnI	GCTCC	1 cut(s)	66
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	140, 518
MalI	GATC	2 cut(s)	243, 297
MboI	GATC	2 cut(s)	241, 295
MboII	GAAGA	2 cut(s)	350, 476
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	2 cut(s)	555, 588
MluNI	TGGCCA	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	43, 98, 145, 181, 240, 415, 533
Mox20I	TGGCCA	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	400
MseI	TTAA	4 cut(s)	348, 422, 554, 592
Msp20I	TGGCCA	1 cut(s)	400
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	270, 318
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	270
NciI	CCSGG	1 cut(s)	318
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	2 cut(s)	241, 295
NlaIII	CATG	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	228
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	4 cut(s)	348, 422, 554, 592
Sau3AI	GATC	2 cut(s)	241, 295
ScrFI	CCNGG	2 cut(s)	270, 318
SetI	ASST	9 cut(s)	64, 71, 192, 202, 257, 348, 407, 525, 534
SfaNI	GCATC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	290
Sse9I	AATT	2 cut(s)	555, 588
SsiI	CCGC	2 cut(s)	418, 548
StyD4I	CCNGG	2 cut(s)	268, 316
TaaI	ACNGT	2 cut(s)	55, 224
TaqI	TCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	555, 588
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	4 cut(s)	348, 422, 554, 592
Tru9I	TTAA	4 cut(s)	348, 422, 554, 592
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.