Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

1695425 .. 1696217

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCAGATATGAACTTGAAGTGTTTCACTTGTGAGGAGCTAAATGATGCTACAAATACAGTCGAGGAAGAACTAGGACGCGGTGCTTCTGTAACAGTTTTCAAAGGGGTCTTGGTGGAACTGGAAAATGTGTTGCTGTCAAATTCTTGTATATGGGTTTATGAGCAATGGCTCTCTAGCAAGCTTCCTCCCTTTGAAGATTCAATGACAAACTGGCACCAAAGAAGCCAAGCTTTTGAGAATAGACCAGACTCAAACTACGACTGGAATCAGGGGAACGAAAGGCATTTTAACGCAATGGCAGAGGATGAAGATAAAATGATATTAGCTTATTGGGCATACGATTGCTATAAGCCTAAGAAACTGCAGCTGCTATTCAAGGACAGTGAGGGAATGCTTGACGTGATGAAAATTGAGAAGTATGTTATGATTGCAATATGTTGCATTCAGGAGAACCCGTCGCTCAGGCCCATGATGAAGAAAATCACATCCATGCTCGAAGGAACTGTTGTCTCAACTCCACCCGATCCATCTTCTTTCATAAGTTCAATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

186

Amino Acids

21.35

Weight (kDa)

4.63

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	142
AgsI	TTSAA	6 cut(s)	19, 103, 197, 204, 379, 549
AjiI	CACGTC	1 cut(s)	403
AluBI	AGCT	5 cut(s)	40, 184, 233, 329, 370
AluI	AGCT	5 cut(s)	40, 184, 233, 329, 370
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	367, 370
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	357, 379
BccI	CCATC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	2 cut(s)	74, 177
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	2 cut(s)	368, 371
BlsI	GCNGC	2 cut(s)	369, 372
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	218
BmsI	GCATC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bse1I	ACTGG	3 cut(s)	126, 218, 269
Bse3DI	GCAATG	2 cut(s)	173, 303
BseGI	GGATG	2 cut(s)	313, 488
BseMI	GCAATG	2 cut(s)	173, 303
BseMII	CTCAG	1 cut(s)	478
BseNI	ACTGG	3 cut(s)	126, 218, 269
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	357, 379
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	469
BshNI	GGYRCC	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	517
BsmI	GAATGC	2 cut(s)	399, 444
BsnI	GGCC	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	526
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	173, 303
BsrI	ACTGG	3 cut(s)	126, 218, 269
BssMI	GATC	1 cut(s)	526
Bst4CI	ACNGT	4 cut(s)	61, 97, 386, 508
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	357, 464
BstF5I	GGATG	2 cut(s)	313, 488
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	357, 379
BsuRI	GGCC	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	313, 488
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	1 cut(s)	87
CviAII	CATG	2 cut(s)	472, 493
CviJI	RGCY	9 cut(s)	40, 172, 184, 228, 233, 329, 355, 370, 469
CviKI_1	RGCY	9 cut(s)	40, 172, 184, 228, 233, 329, 355, 370, 469
DdeI	CTNAG	2 cut(s)	357, 464
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
FaeI	CATG	2 cut(s)	475, 496
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FatI	CATG	2 cut(s)	471, 492
Fnu4HI	GCNGC	2 cut(s)	368, 371
FokI	GGATG	2 cut(s)	320, 475
Fsp4HI	GCNGC	2 cut(s)	368, 371
FspBI	CTAG	2 cut(s)	74, 177
GluI	GCNGC	2 cut(s)	368, 371
HaeIII	GGCC	1 cut(s)	469
HgaI	GACGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	475, 496
HindIII	AAGCTT	2 cut(s)	182, 231
HinfI	GANTC	3 cut(s)	200, 251, 268
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	4 cut(s)	61, 97, 386, 508
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	367, 434, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	357, 464
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	475, 496
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	107, 199, 250, 257, 261, 434, 451
Lsp1109I	GCAGC	2 cut(s)	357, 379
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	74, 177
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	5 cut(s)	80, 209, 323, 490, 525
MluCI	AATT	2 cut(s)	142, 411
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	28, 58, 198, 298, 382
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	370
Mva1269I	GAATGC	2 cut(s)	399, 444
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	2 cut(s)	475, 496
NlaIV	GGNNCC	1 cut(s)	218
PctI	GAATGC	2 cut(s)	399, 444
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	200, 268
PkrI	GCNGC	2 cut(s)	369, 372
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	468
PstI	CTGCAG	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	368, 371
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	1 cut(s)	245
SetI	ASST	6 cut(s)	42, 186, 235, 331, 372, 405
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	142, 411
SsiI	CCGC	1 cut(s)	81
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	2 cut(s)	74, 177
TaaI	ACNGT	4 cut(s)	61, 97, 386, 508
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	63, 498
TasI	AATT	2 cut(s)	142, 411
TfiI	GAWTC	2 cut(s)	200, 268
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	367, 370
TspDTI	ATGAA	5 cut(s)	26, 324, 422, 491, 529
TspRI	CASTG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	2 cut(s)	74, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.