Rw1G007840

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
16687692 .. 16688971
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007840.1

Sequence Viewer

Length: 1239 bp
ATGGAAGTGGCTTTTACTGTATGGCTGCTTCTGTTGCTTATTTCCACATTGTTTCTGGCCCCAATTTATGTCTTTTCCCACACTGATTATAAAGTAGCAGTGGGCGTGATTCTCTCTCTGCAACTTCAGGTCACAACTCCTCATGGCTTTCTCCTTCTGTATTTCTTGCTTTCTATATGGTTTGCCAAGATACCAGACAGAACCATAGTTTGGTATGCAAATGGAGATAGGCCTGCACCTAAGGGATCAATTGTGAACTTGACTTCCAGCAGTGGATTAGTGCTTACTCCTCAGGGTGAACAGCTATGGAAATCTGATCTAACCATTGCTGGCTTTGTTGCTCATGGGGTTATGAATGATAAAGGTAACTTTGTTCTGGAAGATGAGAAGTCAGAAAAGTTATGGGAGACATTCAAGAATCCTACTGATACCATGTTACCTGGGCAAATATTAGAAAGAGGAGGGAGACTTTCTTCTCGACAATCAGAGACTAACTATGCGAGAGGACACTTTCAGATAGATTTTCAAGAAGATGGGAATCTTGTGTTTAGTGCCAAAAAACCTTTTTATTCTACTGCAACTACCGCAGGGACTGTTCCAGGTAGTGAAAGTAAACAACTGGTTTTCAATGAGTCAGGCAACTTCTATATTCTGCGAGTGAATGGTGGAAGATTCACTTTCACAGCAGAGGAACGCGTAGCAAGGGACTACTATCTCCGGTCAACTCTCAACTTTGATGGGGTTTTGGCTCAATATTTTCTCCCAAAGTCTTTTGTTGACACTGTAAGCTGGAAACCTCTTTGGTCAGAACCAGATAACATTTGCCAGAAAGTTGATTCAGGTGCAGGTGTATGTGGGTACAACAGTATCTGCACTCTGAAAACAGATCAAAGGCCAACCTGTAAATGCCCAAGAGGATACTCTTTGCTTGATCCAAATGACCCGTACGGGAGCTGCAATCCAAATTTCAGACATGGCTGTGAAGATGAGCCTAGTTTTTCAAAAGATCAATATGATATTCAGGTGCTACCAAATACTGATTGGCTTACCCCCGGTTATGAGCTGTTAAATGCTTCTACTGCAGACAAATGCAGTCAATATTGCAAGCAAGATTGTTTGTGTGATGTTGCTATCTACCACAATGAAACCTGTTGGAAAAAGAAATTACTTCTCTCATATGGGAGAGAAGACAGCAGTCTGAATGCAAAGACCTTCATCAAATTCAAGAAGGATAATTAA

Protein Analysis

412

Amino Acids

46.43

Weight (kDa)

5.94

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 68 - 152 5.7e-13 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AarI CACCTGC 1 cut(s) 836
Acc36I ACCTGC 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 210
AccII CGCG 1 cut(s) 696
AciI CCGC 1 cut(s) 585
AclWI GGATC 2 cut(s) 253, 926
AcsI RAATTY 2 cut(s) 964, 1220
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 2 cut(s) 860, 947
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 5 cut(s) 415, 527, 628, 1002, 1225
AjnI CCWGG 2 cut(s) 439, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 193, 225
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 304, 789, 954, 1063
AluI AGCT 4 cut(s) 304, 789, 954, 1063
Alw26I GTCTC 3 cut(s) 401, 460, 482
AlwI GGATC 2 cut(s) 253, 926
AlwNI CAGNNNCTG 2 cut(s) 593, 870
AoxI GGCC 3 cut(s) 57, 230, 893
ApeKI GCWGC 2 cut(s) 25, 954
ApoI RAATTY 2 cut(s) 964, 1220
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 1 cut(s) 308
AxyI CCTNAGG 2 cut(s) 240, 291
BaeI ACNNNNGTAYC 4 cut(s) 850, 850, 883, 883
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 1 cut(s) 1194
BbvI GCAGC 2 cut(s) 12, 941
BccI CCATC 2 cut(s) 527, 731
BciT130I CCWGG 2 cut(s) 441, 600
BciVI GTATCC 1 cut(s) 911
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 3 cut(s) 401, 460, 482
BfaI CTAG 1 cut(s) 993
BfmI CTRYAG 1 cut(s) 1080
BfuAI ACCTGC 1 cut(s) 836
BfuI GTATCC 1 cut(s) 911
BisI GCNGC 2 cut(s) 26, 955
BlsI GCNGC 2 cut(s) 27, 956
Bme1390I CCNGG 3 cut(s) 441, 600, 1053
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 441, 600, 1053
BoxI GACNNNNGTC 1 cut(s) 1194
BpiI GAAGAC 1 cut(s) 1194
BpuMI CCSGG 1 cut(s) 1053
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 440, 1051
BsaWI WCCGGW 1 cut(s) 717
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 624
Bse21I CCTNAGG 2 cut(s) 240, 291
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 2 cut(s) 441, 600
BseDI CCNNGG 2 cut(s) 440, 1051
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 624
BseRI GAGGAG 3 cut(s) 129, 279, 474
BseXI GCAGC 2 cut(s) 12, 941
BsgI GTGCAG 3 cut(s) 219, 856, 864
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 3 cut(s) 59, 232, 895
BsiSI CCGG 2 cut(s) 718, 1053
BsiWI CGTACG 1 cut(s) 945
BslFI GGGAC 2 cut(s) 604, 719
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 3 cut(s) 401, 460, 482
BsmFI GGGAC 2 cut(s) 604, 719
BsmI GAATGC 1 cut(s) 1207
BsnI GGCC 3 cut(s) 59, 232, 895
Bsp143I GATC 5 cut(s) 245, 316, 886, 931, 1006
BspACI CCGC 1 cut(s) 585
BspANI GGCC 3 cut(s) 59, 232, 895
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 1084
BspMI ACCTGC 1 cut(s) 836
BspPI GGATC 2 cut(s) 253, 926
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 624
BssECI CCNNGG 2 cut(s) 440, 1051
BssMI GATC 5 cut(s) 245, 316, 886, 931, 1006
Bst2UI CCWGG 2 cut(s) 441, 600
Bst4CI ACNGT 4 cut(s) 19, 595, 784, 866
BstC8I GCNNGC 3 cut(s) 234, 331, 1106
BstDEI CTNAG 2 cut(s) 240, 291
BstFNI CGCG 1 cut(s) 696
BstKTI GATC 5 cut(s) 248, 319, 889, 934, 1009
BstMAI GTCTC 3 cut(s) 401, 460, 482
BstMBI GATC 5 cut(s) 245, 316, 886, 931, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 34, 584, 1079
BstNI CCWGG 2 cut(s) 441, 600
BstPAI GACNNNNGTC 1 cut(s) 1194
BstSCI CCNGG 3 cut(s) 439, 598, 1051
BstSFI CTRYAG 1 cut(s) 1080
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 2 cut(s) 12, 941
BstV2I GAAGAC 1 cut(s) 1194
Bsu36I CCTNAGG 2 cut(s) 240, 291
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 3 cut(s) 59, 232, 895
BtsI GCAGTG 2 cut(s) 105, 277
BtsIMutI CAGTG 4 cut(s) 81, 105, 277, 780
BveI ACCTGC 1 cut(s) 836
Cac8I GCNNGC 3 cut(s) 234, 331, 1106
CaiI CAGNNNCTG 2 cut(s) 593, 870
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 859, 946
CviAII CATG 4 cut(s) 143, 344, 433, 974
CviQI GTAC 2 cut(s) 859, 946
DdeI CTNAG 2 cut(s) 240, 291
DpnI GATC 5 cut(s) 247, 318, 888, 933, 1008
DpnII GATC 5 cut(s) 245, 316, 886, 931, 1006
Eco147I AGGCCT 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 110
Eco81I CCTNAGG 2 cut(s) 240, 291
EcoRII CCWGG 2 cut(s) 439, 598
FaeI CATG 4 cut(s) 146, 347, 436, 977
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FaqI GGGAC 2 cut(s) 604, 719
FatI CATG 4 cut(s) 142, 343, 432, 973
FauNDI CATATG 1 cut(s) 1177
Fnu4HI GCNGC 2 cut(s) 26, 955
Fsp4HI GCNGC 2 cut(s) 26, 955
FspBI CTAG 1 cut(s) 993
GluI GCNGC 2 cut(s) 26, 955
HaeIII GGCC 3 cut(s) 59, 232, 895
HapII CCGG 2 cut(s) 718, 1053
Hin1II CATG 4 cut(s) 146, 347, 436, 977
HincII GTYRAC 2 cut(s) 723, 778
HindII GTYRAC 2 cut(s) 723, 778
HinfI GANTC 6 cut(s) 109, 418, 538, 632, 672, 836
HpaII CCGG 2 cut(s) 718, 1053
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 5 cut(s) 256, 299, 614, 723, 778
Hpy188I TCNGA 8 cut(s) 316, 394, 487, 516, 808, 879, 971, 1200
Hpy188III TCNNGA 5 cut(s) 377, 415, 477, 527, 1225
Hpy8I GTNNAC 5 cut(s) 256, 299, 614, 723, 778
HpyAV CCTTC 3 cut(s) 164, 1222, 1222
HpyCH4III ACNGT 4 cut(s) 19, 595, 784, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 584, 1079
HpyF3I CTNAG 2 cut(s) 240, 291
Hsp92II CATG 4 cut(s) 146, 347, 436, 977
Kzo9I GATC 5 cut(s) 245, 316, 886, 931, 1006
LmnI GCTCC 1 cut(s) 951
Lsp1109I GCAGC 2 cut(s) 12, 941
MaeI CTAG 1 cut(s) 993
MaeIII GTNAC 3 cut(s) 130, 365, 435
MalI GATC 5 cut(s) 247, 318, 888, 933, 1008
MboI GATC 5 cut(s) 245, 316, 886, 931, 1006
MboII GAAGA 6 cut(s) 392, 465, 542, 681, 995, 1199
MfeI CAATTG 1 cut(s) 249
MluCI AATT 6 cut(s) 63, 249, 964, 1163, 1220, 1234
MluI ACGCGT 1 cut(s) 694
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 1133
MnlI CCTC 8 cut(s) 150, 300, 452, 455, 497, 682, 807, 908
MseI TTAA 2 cut(s) 1067, 1237
MslI CAYNNNNRTG 1 cut(s) 978
MspI CCGG 2 cut(s) 718, 1053
MspR9I CCNGG 3 cut(s) 441, 600, 1053
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 1207
MvaI CCWGG 2 cut(s) 441, 600
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 3 cut(s) 34, 584, 1079
NciI CCSGG 1 cut(s) 1053
NdeI CATATG 1 cut(s) 1177
NdeII GATC 5 cut(s) 245, 316, 886, 931, 1006
NlaIII CATG 4 cut(s) 146, 347, 436, 977
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 836
PceI AGGCCT 1 cut(s) 232
PctI GAATGC 1 cut(s) 1207
PfeI GAWTC 5 cut(s) 109, 418, 538, 672, 836
Pfl23II CGTACG 1 cut(s) 945
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 27, 956
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
PshAI GACNNNNGTC 1 cut(s) 1194
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 439, 598
PspGI CCWGG 2 cut(s) 439, 598
PspLI CGTACG 1 cut(s) 945
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 1084
PstNI CAGNNNCTG 2 cut(s) 593, 870
RsaI GTAC 2 cut(s) 860, 947
RsaNI GTAC 2 cut(s) 859, 946
RseI CAYNNNNRTG 1 cut(s) 978
SaqAI TTAA 2 cut(s) 1067, 1237
SatI GCNGC 2 cut(s) 26, 955
Sau3AI GATC 5 cut(s) 245, 316, 886, 931, 1006
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 441, 600, 1053
SfcI CTRYAG 1 cut(s) 1080
SmiMI CAYNNNNRTG 1 cut(s) 978
Sse9I AATT 6 cut(s) 63, 249, 964, 1163, 1220, 1234
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 1 cut(s) 585
SspI AATATT 3 cut(s) 450, 755, 1100
SspMI CTAG 1 cut(s) 993
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 3 cut(s) 439, 598, 1051
TaaI ACNGT 4 cut(s) 19, 595, 784, 866
TaqI TCGA 1 cut(s) 478
TasI AATT 6 cut(s) 63, 249, 964, 1163, 1220, 1234
TfiI GAWTC 5 cut(s) 109, 418, 538, 672, 836
Tru1I TTAA 2 cut(s) 1067, 1237
Tru9I TTAA 2 cut(s) 1067, 1237
TscAI CASTG 4 cut(s) 88, 105, 277, 787
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 25, 954
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 368, 1158, 1204
TspRI CASTG 4 cut(s) 88, 105, 277, 787
Van91I CCANNNNNTGG 1 cut(s) 210
XapI RAATTY 2 cut(s) 964, 1220
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 1038
XspI CTAG 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.