Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

84086423 .. 84096047

Gene Structure 9625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG533600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGGCGACACAGGATGTAACCTCGGCGAGGGCTTGTTCGATGTGGGGCGCCAAGAGCAAGATGGCCAGCTCATTTGGAGATCGGGAGCGAGATCGCTTGCAGGAGATCGAGAGCGATGTCTTCAGGCTTCTGTCGTGGCATGGATTTTTGGGTCACCGATATGAAATGAAGAAATTAGACGAAGAAGCAGAAGATCAAGATCAAATAATACTTGCTGACTGGGCATACGACTGCTATAAGCATAAGAAACTACATCTTCTGTTGGAGAAAAATGATGAGGCAATTGAAGACGTCAAGATGATGGAGAAGTACGTGATGATCGCATTGTGGTGCATTCAGGAAGATCCATCAATCAGACCTACCATGAAGAAAACCATTCATATGCTTGAAGGAACTGTCGCAGTCCCAAAACCACCAGATCAATCTCTTACAAGTTCCATACTTTTTGACCATGCACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

154

Amino Acids

17.83

Weight (kDa)

5.47

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	51, 294
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	290, 392
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	115, 297
BccI	CCATC	3 cut(s)	58, 298, 358
BfoI	RGCGCY	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	2 cut(s)	115, 297
BsaAI	YACGTR	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	51, 294
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
BspANI	GGCC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
BssNI	GRCGYC	2 cut(s)	51, 294
Bst4CI	ACNGT	1 cut(s)	400
BstACI	GRCGYC	2 cut(s)	51, 294
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	70, 101
BstEII	GGTNACC	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	8 cut(s)	85, 97, 111, 199, 205, 324, 349, 424
BstMBI	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 224
BstPI	GGTNACC	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	115, 297
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	70, 101
CfoI	GCGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	143, 367, 455
CviJI	RGCY	4 cut(s)	35, 68, 72, 130
CviKI_1	RGCY	4 cut(s)	35, 68, 72, 130
CviQI	GTAC	1 cut(s)	313
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	8 cut(s)	84, 96, 110, 198, 204, 323, 348, 423
DpnII	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
EaeI	YGGCCR	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	3 cut(s)	146, 370, 458
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	142, 366, 454
FauNDI	CATATG	1 cut(s)	384
FokI	GGATG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	2 cut(s)	51, 294
Hin1II	CATG	3 cut(s)	146, 370, 458
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	5 cut(s)	86, 112, 200, 298, 341
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	2 cut(s)	294, 315
HpyCH4V	TGCA	3 cut(s)	103, 336, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 224
HpySE526I	ACGT	2 cut(s)	294, 315
Hsp92I	GRCGYC	2 cut(s)	51, 294
Hsp92II	CATG	3 cut(s)	146, 370, 458
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	82, 89, 112, 208, 326, 432
MaeII	ACGT	2 cut(s)	294, 315
MaeIII	GTNAC	2 cut(s)	19, 155
MalI	GATC	8 cut(s)	84, 96, 110, 198, 204, 323, 348, 423
MboI	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
MboII	GAAGA	8 cut(s)	115, 184, 197, 206, 251, 302, 356, 382
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	2 cut(s)	176, 285
MluNI	TGGCCA	1 cut(s)	68
Mly113I	GGCGCC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	3 cut(s)	24, 34, 274
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MslI	CAYNNNNRTG	3 cut(s)	162, 331, 383
Msp20I	TGGCCA	1 cut(s)	68
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	57, 224
NarI	GGCGCC	1 cut(s)	51
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
NlaIII	CATG	3 cut(s)	146, 370, 458
NlaIV	GGNNCC	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	336
PluTI	GGCGCC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	3 cut(s)	162, 331, 383
Sau3AI	GATC	8 cut(s)	82, 94, 108, 196, 202, 321, 346, 421
SetI	ASST	5 cut(s)	26, 74, 297, 318, 364
SfoI	GGCGCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	3 cut(s)	162, 331, 383
Sse9I	AATT	2 cut(s)	176, 285
SspDI	GGCGCC	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	2 cut(s)	297, 318
TaqI	TCGA	2 cut(s)	41, 111
TasI	AATT	2 cut(s)	176, 285
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	4 cut(s)	180, 185, 371, 383
XagI	CCTNNNNNAGG	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.