Rh5AG509800

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
86092244 .. 86093899
1656 bp
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UTR
Exon/CDS
Intron
Rh5AG509800.1

Sequence Viewer

Length: 330 bp
ATGGGGTTCTACCACAGAGTAACTCTTGACTATGATGGAGTGTTGAGGAAGTACTTTGAGGCAGAGGCAGAGGATGAAGATAAAATGATACTAGCTGACTGGGCATATGACTGCTACGCGCAAAAGAAATTGCGTCTACTATTTGACAATGATGATGAGGCAGTGCATGATATCAAGAATATGGAGAAGTACTTGATGATTGCATTGTGGTGCATCCAGGAGGATCCGTCACTGAGACCCACAACGAAGAAACTCACACTGATGCTTGAAGGAACTGTTGAAGTCTCAATTCCACCAGATCCATCCTCATTTGCAAGTTCGATATTGTAA

Protein Analysis

109

Amino Acids

12.67

Weight (kDa)

4.54

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AccII CGCG 1 cut(s) 119
AclWI GGATC 3 cut(s) 218, 231, 293
AfaI GTAC 2 cut(s) 53, 191
AgsI TTSAA 2 cut(s) 269, 281
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 229, 289
AlwI GGATC 3 cut(s) 218, 231, 293
AspLEI GCGC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 223
BccI CCATC 2 cut(s) 29, 310
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 229, 289
BfaI CTAG 1 cut(s) 92
BmcAI AGTACT 2 cut(s) 53, 191
Bme1390I CCNGG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 222, 252
BmuI ACTGGG 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 3 cut(s) 79, 213, 302
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 229, 289
Bso31I GGTCTC 1 cut(s) 229
Bsp143I GATC 2 cut(s) 223, 298
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 3 cut(s) 218, 231, 293
BspTNI GGTCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 104
BssMI GATC 2 cut(s) 223, 298
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 3 cut(s) 79, 213, 302
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 226, 301
BstMAI GTCTC 2 cut(s) 229, 289
BstMBI GATC 2 cut(s) 223, 298
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstUI CGCG 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 223, 298
BstYI RGATCY 2 cut(s) 223, 298
BtsCI GGATG 3 cut(s) 79, 213, 302
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 168, 230, 257
CfoI GCGC 1 cut(s) 121
CseI GACGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 52, 190
CviAII CATG 1 cut(s) 167
CviJI RGCY 1 cut(s) 95
CviKI_1 RGCY 1 cut(s) 95
CviQI GTAC 2 cut(s) 52, 190
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 225, 300
DpnII GATC 2 cut(s) 223, 298
Eco31I GGTCTC 1 cut(s) 229
Eco32I GATATC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 172
FaeI CATG 1 cut(s) 170
FaiI YATR 5 cut(s) 33, 106, 108, 168, 182
FatI CATG 1 cut(s) 166
FauNDI CATATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 136
FokI GGATG 3 cut(s) 86, 200, 289
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 120
HgaI GACGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 26, 175
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 166, 203, 213, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 2 cut(s) 223, 298
LpnPI CCDG 4 cut(s) 85, 203, 230, 309
LweI GCATC 2 cut(s) 222, 252
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 19, 228
MalI GATC 2 cut(s) 225, 300
MboI GATC 2 cut(s) 223, 298
MboII GAAGA 2 cut(s) 89, 259
MflI RGATCY 2 cut(s) 223, 298
MluCI AATT 2 cut(s) 128, 288
MnlI CCTC 7 cut(s) 39, 52, 58, 64, 151, 214, 316
MslI CAYNNNNRTG 2 cut(s) 208, 260
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeI CATATG 1 cut(s) 106
NdeII GATC 2 cut(s) 223, 298
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 225
PsuI RGATCY 2 cut(s) 223, 298
RsaI GTAC 2 cut(s) 53, 191
RsaNI GTAC 2 cut(s) 52, 190
RseI CAYNNNNRTG 2 cut(s) 208, 260
Sau3AI GATC 2 cut(s) 223, 298
ScaI AGTACT 2 cut(s) 53, 191
ScrFI CCNGG 1 cut(s) 218
SetI ASST 1 cut(s) 97
SfaNI GCATC 2 cut(s) 222, 252
SmiMI CAYNNNNRTG 2 cut(s) 208, 260
Sse9I AATT 2 cut(s) 128, 288
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 320
TasI AATT 2 cut(s) 128, 288
TatI WGTACW 2 cut(s) 51, 189
TscAI CASTG 3 cut(s) 168, 237, 264
TseFI GTSAC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 3 cut(s) 168, 237, 264
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 1 cut(s) 92
ZrmI AGTACT 2 cut(s) 53, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.