Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

4095724 .. 4098435

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTGGGAGCTTCTCTCTCTGCAACTGCAGGTAACAGCTCCTCATGGCTTTCTCCTTCTGGCGATTTTTGCCTTTGGTTTTCGACAACTCGAAAACAGTGATCTTTTCTTGCTTTCTTTATGGTATGCCAAGATTCCAGACAGAACCATAGTTTGGTATGCAAATAATGGGGATAGTCCTGCAGTTGCAGCTAAAGGTTCAATTGTGAATTTGACTGCTGCCAGTGGACTAGTGCTTACAAGTCCTCAGGGTGCTCAGCTTTGGAAATCTGGGTCCATTTCTGGAGTTGCCTTCGGGGTCTTGAATGATACCGGCAACTTTGTTCTTGAAGATGACAATTCAGAGAGTTTATGGGAGACCTTTAATAATCCAACTCATACCATTTTACCTGGGCAGGATATCGGAAAAGGAGGGAAGCTTTGGTCTCAACAATCCGAGACTAACTTTTCGAAAGGAAGATTCGAGCTACGTATGCAAGATGATGGCAACCTTGTGCTTGTCACCATAAACTTGCCCACTGAGTTTGCCAACGCGCCTTACTATGCAAGTCACACTACCGGTGATTCAAACTCTTCTACTGCTGGTACAAAGCTGGAGTTCAATAGCTCAGGCTACATGTATGTACTGAGAGAGAACGGCGAAAAATCCCCCATCACAGAAGCAGAGACAGTCTCAGCTAGGAGCTTCTATCTTAGAGCAACCCTCAACTTTGATGGGGTTTTTGCTCAATACTCTCACCCCGAGAGATTCCTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

252

Amino Acids

27.65

Weight (kDa)

4.88

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	49 - 135	1.3e-13	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccII	CGCG	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	2 cut(s)	586, 624
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	201, 304, 329, 567, 601
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	5 cut(s)	350, 429, 431, 659, 676
Ama87I	CYCGRG	2 cut(s)	740, 752
ApeKI	GCWGC	2 cut(s)	188, 218
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AsiGI	ACCGGT	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	493, 572, 728
AsuII	TTCGAA	1 cut(s)	449
AvaI	CYCGRG	2 cut(s)	740, 752
AvaII	GGWCC	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	200, 205
BccI	CCATC	3 cut(s)	476, 659, 707
BceAI	ACGGC	1 cut(s)	652
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	5 cut(s)	350, 429, 431, 659, 676
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	2 cut(s)	230, 678
BfmI	CTRYAG	2 cut(s)	26, 180
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	2 cut(s)	189, 219
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	2 cut(s)	190, 220
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	2 cut(s)	740, 752
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	390
BplI	GAGNNNNNCTC	5 cut(s)	31, 656, 688, 687, 719
BpmI	CTGGAG	2 cut(s)	303, 614
Bpu10I	CCTNAGC	1 cut(s)	607
Bpu1102I	GCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	470
BsaI	GGTCTC	2 cut(s)	350, 429
BsaJI	CCNNGG	2 cut(s)	389, 751
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	2 cut(s)	311, 557
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	389, 751
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	6 cut(s)	260, 269, 510, 617, 621, 687
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	200, 205
Bsh1236I	CGCG	1 cut(s)	533
BshTI	ACCGGT	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	740, 752
BsiSI	CCGG	2 cut(s)	312, 558
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	5 cut(s)	350, 429, 431, 659, 676
Bso31I	GGTCTC	2 cut(s)	350, 429
BsoBI	CYCGRG	2 cut(s)	740, 752
Bsp119I	TTCGAA	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	255
BspCNI	CTCAG	6 cut(s)	259, 268, 511, 618, 620, 686
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	274
BspMAI	CTGCAG	2 cut(s)	30, 184
BspMI	ACCTGC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	449
BspTNI	GGTCTC	2 cut(s)	350, 429
BsrFI	RCCGGY	2 cut(s)	311, 557
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	2 cut(s)	311, 557
BssECI	CCNNGG	2 cut(s)	389, 751
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	98, 670
Bst6I	CTCTTC	1 cut(s)	577
BstBAI	YACGTR	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	449
BstDEI	CTNAG	7 cut(s)	246, 255, 519, 607, 626, 673, 692
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	5 cut(s)	350, 429, 431, 659, 676
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 188, 472
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	26, 180
BstSNI	TACGTA	1 cut(s)	470
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	200, 205
Bsu36I	CCTNAGG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	103, 229, 516
BveI	ACCTGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	2 cut(s)	311, 557
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	585, 623
CspAI	ACCGGT	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	2 cut(s)	44, 616
CviQI	GTAC	2 cut(s)	585, 623
DdeI	CTNAG	7 cut(s)	246, 255, 519, 607, 626, 673, 692
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco105I	TACGTA	1 cut(s)	470
Eco31I	GGTCTC	2 cut(s)	350, 429
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	2 cut(s)	740, 752
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	400
FaeI	CATG	2 cut(s)	47, 619
FatI	CATG	2 cut(s)	43, 615
Fnu4HI	GCNGC	2 cut(s)	189, 219
Fsp4HI	GCNGC	2 cut(s)	189, 219
FspBI	CTAG	2 cut(s)	230, 678
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	2 cut(s)	189, 219
GsuI	CTGGAG	2 cut(s)	303, 614
HapII	CCGG	2 cut(s)	312, 558
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	2 cut(s)	47, 619
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	133, 459, 563, 747
HpaII	CCGG	2 cut(s)	312, 558
HphI	GGTGA	3 cut(s)	493, 572, 728
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	343, 404, 436
Hpy188III	TCNNGA	4 cut(s)	137, 282, 301, 326
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	65, 301
HpyCH4III	ACNGT	2 cut(s)	98, 670
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	7 cut(s)	22, 28, 161, 182, 188, 475, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 188, 472
HpyF3I	CTNAG	7 cut(s)	246, 255, 519, 607, 626, 673, 692
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	47, 619
HspAI	GCGC	1 cut(s)	533
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	3 cut(s)	7, 43, 681
Lsp1109I	GCAGC	2 cut(s)	200, 205
MaeI	CTAG	2 cut(s)	230, 678
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	31, 499, 548
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	341, 468, 564
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	3 cut(s)	201, 208, 337
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	51, 255, 404, 713
MseI	TTAA	1 cut(s)	363
MspI	CCGG	2 cut(s)	312, 558
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	3 cut(s)	68, 188, 472
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	47, 619
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	499, 548
NspI	RCATGY	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	449
PciI	ACATGT	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	133, 459, 563, 747
PflMI	CCANNNNNTGG	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	190, 220
Ppu21I	YACGTR	1 cut(s)	470
PscI	ACATGT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	2 cut(s)	30, 184
RsaI	GTAC	2 cut(s)	586, 624
RsaNI	GTAC	2 cut(s)	585, 623
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	189, 219
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	256
SfcI	CTRYAG	2 cut(s)	26, 180
SfuI	TTCGAA	1 cut(s)	449
SinI	GGWCC	1 cut(s)	273
SnaBI	TACGTA	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	3 cut(s)	201, 208, 337
SspMI	CTAG	2 cut(s)	230, 678
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	98, 670
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	4 cut(s)	82, 90, 449, 462
TasI	AATT	3 cut(s)	201, 208, 337
TatI	WGTACW	1 cut(s)	622
TfiI	GAWTC	4 cut(s)	133, 459, 563, 747
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	3 cut(s)	103, 229, 523
TseFI	GTSAC	2 cut(s)	499, 548
TseI	GCWGC	2 cut(s)	188, 218
Tsp45I	GTSAC	2 cut(s)	499, 548
TspRI	CASTG	3 cut(s)	103, 229, 523
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	619
XspI	CTAG	2 cut(s)	230, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.