Rh5AG515000

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
87247055 .. 87263894
16840 bp
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UTR
Exon/CDS
Intron
Rh5AG515000.1

Sequence Viewer

Length: 324 bp
ATGAAGGAGAGCGGTAGAGATGAGGGAGAAGACGCGAATGGAAGGTGCATGCCCAGCACCGTCGACAACCTCGCTCTGCATCTTTCCCAAATCGTCTTCGCCAGTGTTTCGCTCGAAAGAGGGAGTGTTAGAGACTGTTCTAGATCACGAGTCGACGCCTTGGAAGGTGAAATGAAGCTGGAAGAGACTGTCATGATTGCTCTTTGGTGTATTCAAGAAGACCCATCTCTTCGACCCACGATGAGGAAGGTTGTGCAGATGCTTGAAGGATTAGTGGAAGTACATGCTCCACCATGCCCATCCCCATACAACAGAGTGGCGTGA

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

4.98

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 2 cut(s) 63, 153
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 215, 266
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 126, 179
AsuHPI GGTGA 1 cut(s) 179
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 3 cut(s) 36, 88, 225
BccI CCATC 2 cut(s) 232, 307
BcoDI GTCTC 2 cut(s) 126, 179
BfaI CTAG 1 cut(s) 141
BmsI GCATC 2 cut(s) 88, 249
BpiI GAAGAC 3 cut(s) 36, 88, 225
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 126, 179
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 1 cut(s) 12
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 3 cut(s) 61, 137, 190
Bst6I CTCTTC 2 cut(s) 177, 234
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 1 cut(s) 299
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 2 cut(s) 126, 179
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 52, 287
BstUI CGCG 1 cut(s) 35
BstV2I GAAGAC 3 cut(s) 36, 88, 225
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 192
CseI GACGC 2 cut(s) 41, 164
Csp6I GTAC 1 cut(s) 281
CviAII CATG 4 cut(s) 49, 193, 284, 294
CviJI RGCY 1 cut(s) 178
CviKI_1 RGCY 1 cut(s) 178
CviQI GTAC 1 cut(s) 281
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 177, 234
EarI CTCTTC 2 cut(s) 177, 234
Eco130I CCWWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 4 cut(s) 52, 196, 287, 297
FaiI YATR 5 cut(s) 50, 194, 285, 295, 307
FatI CATG 4 cut(s) 48, 192, 283, 293
FblI GTMKAC 2 cut(s) 63, 153
FokI GGATG 1 cut(s) 286
FspBI CTAG 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 57
HgaI GACGC 2 cut(s) 41, 164
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 4 cut(s) 52, 196, 287, 297
HincII GTYRAC 2 cut(s) 64, 154
HindII GTYRAC 2 cut(s) 64, 154
HinfI GANTC 1 cut(s) 150
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 64, 154
Hpy188III TCNNGA 4 cut(s) 141, 147, 193, 215
Hpy8I GTNNAC 2 cut(s) 64, 154
Hpy99I CGWCG 2 cut(s) 65, 158
HpyAV CCTTC 4 cut(s) 36, 158, 241, 260
HpyCH4III ACNGT 3 cut(s) 61, 137, 190
HpyCH4V TGCA 3 cut(s) 48, 79, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 4 cut(s) 52, 196, 287, 297
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 67, 115, 164
LweI GCATC 2 cut(s) 88, 249
MaeI CTAG 1 cut(s) 141
MalI GATC 1 cut(s) 145
MbiI CCGCTC 1 cut(s) 12
MboI GATC 1 cut(s) 143
MboII GAAGA 5 cut(s) 41, 88, 194, 221, 230
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 4 cut(s) 16, 80, 113, 237
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 143
NlaIII CATG 4 cut(s) 52, 196, 287, 297
NspI RCATGY 2 cut(s) 52, 287
PaeI GCATGC 1 cut(s) 52
PagI TCATGA 1 cut(s) 192
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 53
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SalI GTCGAC 2 cut(s) 62, 152
Sau3AI GATC 1 cut(s) 143
SchI GAGTC 1 cut(s) 159
SetI ASST 5 cut(s) 47, 72, 169, 180, 252
SfaNI GCATC 2 cut(s) 88, 249
SphI GCATGC 1 cut(s) 52
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 61, 137, 190
TaqI TCGA 4 cut(s) 63, 114, 153, 232
TatI WGTACW 1 cut(s) 280
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 17, 188
TspRI CASTG 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 2 cut(s) 52, 287
XmiI GTMKAC 2 cut(s) 63, 153
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.