Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8175864.1

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 623

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8175864.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 605 bp

atgatagtccaattaggttttacaagcagctcctcatggctttctccttctggagattttgcctttggttttcgacaacttgaaaacagtgatcttttcttgctttctacatggtatgctaagattccggacagaaccatagtttggtatgcaagtggggatagtcctgcagttgtagctaagggctcacttgtgaatttgactgctgccagtggactagtgcttacaagtcctcagggtgctcagctttggaaatctgggtccatttctggagttgccttcggggtcttgaatgatacaggtaactttgttcttgaagatgacaattcagagagtttatgggagaccttcaataatccaactcataccattttacccggacaggatatcgaaaaaggagggaagatctggtctcaacgatcagagaccaacttttcgaaaggaagattccagctacgtatgcgagatgatggcgatcttgtgcttaccaccataaacttgccatctgagtttgccaacatgccttactatgcaagtgacactaccggtgattcaaattcttctactgctggtacaaagctggagttcaatagctcaggctacat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

201

Amino Acids

21.81

Weight (kDa)

4.52

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	196, 556
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	6 cut(s)	83, 292, 317, 352, 555, 589
AhlI	ACTAGT	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AluBI	AGCT	6 cut(s)	30, 179, 247, 454, 580, 594
AluI	AGCT	6 cut(s)	30, 179, 247, 454, 580, 594
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	3 cut(s)	338, 417, 419
Aor13HI	TCCGGA	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	27, 206
ApoI	RAATTY	2 cut(s)	196, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AsiGI	ACCGGT	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	39, 193
BccI	CCATC	2 cut(s)	464, 511
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	3 cut(s)	338, 417, 419
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	2 cut(s)	28, 207
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	2 cut(s)	29, 208
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	378
BpmI	CTGGAG	3 cut(s)	72, 291, 602
Bpu10I	CCTNAGC	2 cut(s)	180, 595
Bpu1102I	GCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	3 cut(s)	338, 417, 419
BsaWI	WCCGGW	2 cut(s)	127, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	248, 257, 498
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	39, 193
BshTI	ACCGGT	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	128, 378, 546
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	3 cut(s)	338, 417, 419
Bso31I	GGTCTC	3 cut(s)	338, 417, 419
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	188, 244
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	91, 405, 419, 475
Bsp1720I	GCTNAGC	1 cut(s)	243
BspCNI	CTCAG	3 cut(s)	247, 256, 499
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	437
BspTNI	GGTCTC	3 cut(s)	338, 417, 419
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	545
BssMI	GATC	4 cut(s)	91, 405, 419, 475
Bst4CI	ACNGT	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	437
BstDEI	CTNAG	6 cut(s)	120, 180, 234, 243, 507, 595
BstKTI	GATC	4 cut(s)	94, 408, 422, 478
BstMAI	GTCTC	3 cut(s)	338, 417, 419
BstMBI	GATC	4 cut(s)	91, 405, 419, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 460
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	168
BstSNI	TACGTA	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	39, 193
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	94, 217
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	573
CspAI	ACCGGT	1 cut(s)	545
CviAII	CATG	3 cut(s)	36, 111, 520
CviJI	RGCY	9 cut(s)	30, 40, 179, 186, 247, 454, 580, 594, 600
CviKI_1	RGCY	9 cut(s)	30, 40, 179, 186, 247, 454, 580, 594, 600
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	6 cut(s)	120, 180, 234, 243, 507, 595
DpnI	GATC	4 cut(s)	93, 407, 421, 477
DpnII	GATC	4 cut(s)	91, 405, 419, 475
Eco105I	TACGTA	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	3 cut(s)	338, 417, 419
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	3 cut(s)	39, 114, 523
FatI	CATG	3 cut(s)	35, 110, 519
Fnu4HI	GCNGC	2 cut(s)	28, 207
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	28, 207
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	28, 207
GsuI	CTGGAG	3 cut(s)	72, 291, 602
HapII	CCGG	3 cut(s)	128, 378, 546
Hin1II	CATG	3 cut(s)	39, 114, 523
HinfI	GANTC	3 cut(s)	124, 447, 551
HpaII	CCGG	3 cut(s)	128, 378, 546
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	331, 424, 508
Hpy188III	TCNNGA	5 cut(s)	51, 128, 270, 289, 314
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	57, 289, 358
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	152, 170, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 460
HpyF3I	CTNAG	6 cut(s)	120, 180, 234, 243, 507, 595
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	39, 114, 523
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	91, 405, 419, 475
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	2 cut(s)	39, 193
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	302, 536
MalI	GATC	4 cut(s)	93, 407, 421, 477
MboI	GATC	4 cut(s)	91, 405, 419, 475
MboII	GAAGA	4 cut(s)	329, 415, 456, 552
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	2 cut(s)	188, 244
MluCI	AATT	4 cut(s)	11, 196, 325, 556
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	3 cut(s)	43, 243, 392
MroI	TCCGGA	1 cut(s)	127
MspI	CCGG	3 cut(s)	128, 378, 546
MspR9I	CCNGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	176, 460
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	4 cut(s)	91, 405, 419, 475
NlaIII	CATG	3 cut(s)	39, 114, 523
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	536
NspI	RCATGY	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	124, 447, 551
PflMI	CCANNNNNTGG	1 cut(s)	144
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	29, 208
Ppu21I	YACGTR	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	405
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SatI	GCNGC	2 cut(s)	28, 207
Sau3AI	GATC	4 cut(s)	91, 405, 419, 475
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	188, 244
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	1 cut(s)	261
SnaBI	TACGTA	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	4 cut(s)	11, 196, 325, 556
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	73, 390, 437
TasI	AATT	4 cut(s)	11, 196, 325, 556
TfiI	GAWTC	3 cut(s)	124, 447, 551
TscAI	CASTG	2 cut(s)	94, 217
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	2 cut(s)	27, 206
Tsp45I	GTSAC	1 cut(s)	536
TspRI	CASTG	2 cut(s)	94, 217
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	2 cut(s)	196, 556
XceI	RCATGY	1 cut(s)	523
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.