RchiOBHm_Chr5g0079061

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
84816345 .. 84817001
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35354

Sequence Viewer

Length: 387 bp
ATGCCCTCCAGGATACTCTTATCTGACCCATCCAGGAGCTGTCATCCAGATTTCAAACACGACTGTAAAAATGAGCTTAGTTATGCAGAAGATTTGTATGACGTTCAGGTGCTAGCAAACACTGATCGGCTCACCTCCAGCTATATGCAGTTAAATGATTCTACTGCTGACACATGCAGTCAATCTTGCTTGCAAGATGGTTCGTGTGCTGCTGCTATTTACAGCCATCAAACCTGTCAGAAAAAGAAGTTTCCGCTCTCATATGGGAGAGAAGATAACACGTTGAATGCGACAACTTTCATCAAATTGACGACAGTTAAGAAGAAGAAGAACGGGAATACTTCGGTACATGTGGGATCAGTTCTTCTGGGCACCTCTGTCTGTTAG

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

7.58

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 364
AfaI GTAC 1 cut(s) 348
AflIII ACRYGT 2 cut(s) 279, 349
AgsI TTSAA 2 cut(s) 55, 286
AjnI CCWGG 2 cut(s) 8, 32
AluBI AGCT 3 cut(s) 39, 76, 141
AluI AGCT 3 cut(s) 39, 76, 141
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 209, 212
AsuHPI GGTGA 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 196, 199
BccI CCATC 3 cut(s) 37, 191, 234
BciT130I CCWGG 2 cut(s) 10, 34
BciVI GTATCC 1 cut(s) 6
BfaI CTAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
Bme1390I CCNGG 2 cut(s) 10, 34
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 2 cut(s) 10, 34
BmtI GCTAGC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 121
BseBI CCWGG 2 cut(s) 10, 34
BseGI GGATG 2 cut(s) 29, 43
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 2 cut(s) 196, 199
BshNI GGYRCC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 2 cut(s) 124, 356
BspACI CCGC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 373
BspOI GCTAGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 256
BssMI GATC 2 cut(s) 124, 356
Bst2UI CCWGG 2 cut(s) 10, 34
Bst4CI ACNGT 2 cut(s) 65, 316
BstC8I GCNNGC 2 cut(s) 114, 191
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 29, 43
BstKTI GATC 2 cut(s) 127, 359
BstMBI GATC 2 cut(s) 124, 356
BstNI CCWGG 2 cut(s) 10, 34
BstNSI RCATGY 2 cut(s) 177, 353
BstSCI CCNGG 2 cut(s) 8, 32
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 196, 199
BsuI GTATCC 1 cut(s) 6
BtsCI GGATG 2 cut(s) 29, 43
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 114, 191
CaiI CAGNNNCTG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 174, 350
CviJI RGCY 5 cut(s) 39, 76, 130, 141, 225
CviKI_1 RGCY 5 cut(s) 39, 76, 130, 141, 225
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 126, 358
DpnII GATC 2 cut(s) 124, 356
EcoRII CCWGG 2 cut(s) 8, 32
FaeI CATG 2 cut(s) 177, 353
FaiI YATR 8 cut(s) 84, 99, 144, 146, 175, 262, 264, 351
FatI CATG 2 cut(s) 173, 349
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 210, 213
FokI GGATG 2 cut(s) 16, 30
Fsp4HI GCNGC 2 cut(s) 210, 213
FspBI CTAG 1 cut(s) 113
GluI GCNGC 2 cut(s) 210, 213
GsuI CTGGAG 1 cut(s) 121
Hin1II CATG 2 cut(s) 177, 353
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 25, 240
Hpy188III TCNNGA 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 65, 316
HpyCH4IV ACGT 2 cut(s) 102, 281
HpyCH4V TGCA 4 cut(s) 86, 148, 177, 193
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 102, 281
Hsp92II CATG 2 cut(s) 177, 353
Kzo9I GATC 2 cut(s) 124, 356
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 8 cut(s) 19, 22, 46, 60, 92, 151, 247, 353
Lsp1109I GCAGC 2 cut(s) 196, 199
MaeI CTAG 1 cut(s) 113
MaeII ACGT 2 cut(s) 102, 281
MalI GATC 2 cut(s) 126, 358
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 124, 356
MboII GAAGA 6 cut(s) 101, 284, 334, 337, 340, 356
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 1 cut(s) 305
MnlI CCTC 3 cut(s) 16, 145, 385
MseI TTAA 2 cut(s) 152, 318
MspR9I CCNGG 2 cut(s) 10, 34
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 10, 34
NdeI CATATG 1 cut(s) 262
NdeII GATC 2 cut(s) 124, 356
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 2 cut(s) 177, 353
NlaIV GGNNCC 1 cut(s) 373
NspI RCATGY 2 cut(s) 177, 353
PciI ACATGT 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 158
PfoI TCCNGGA 2 cut(s) 8, 32
PkrI GCNGC 2 cut(s) 211, 214
PscI ACATGT 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 8, 32
PspGI CCWGG 2 cut(s) 8, 32
PspN4I GGNNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 39
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 2 cut(s) 152, 318
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 2 cut(s) 124, 356
ScrFI CCNGG 2 cut(s) 10, 34
SduI GDGCHC 1 cut(s) 374
SetI ASST 9 cut(s) 41, 78, 105, 111, 137, 143, 236, 284, 377
Sse9I AATT 1 cut(s) 305
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 8, 32
TaaI ACNGT 2 cut(s) 65, 316
TaiI ACGT 2 cut(s) 105, 284
TasI AATT 1 cut(s) 305
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 152, 318
Tru9I TTAA 2 cut(s) 152, 318
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 209, 212
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 1 cut(s) 127
XceI RCATGY 2 cut(s) 177, 353
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.