Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000631.1

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

17325 .. 19450

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000631.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

atgcttctgctaccaatttatgtgcttgcacaaactaatggtagcatagcagtcggtgcttctctctctacagcaggtaactcctcatggatttctccatctggtgactttgcttttggatttcggcaacttgaaaacaatggacttttcttgctttctatatggtttgccaagataccagacaaaactatagtttggtacgtaaatggggatacgcctgcacctaagggatcaacagtgaacttgaatgccaacagtggattagtccttacaagtcctcaaggtaagaagctatggacatccaatgacactaacattattgctggtgtcgttgctcatggggtcatgaatgatgccggtaactttgttctagaaaatgcgaagtcagcaaagttatgggagacgttcaagaatcctagtgatacaatgttgcccgggcaaagaatggaaagaggagggaaactgtcttctcgaaattcagagactgactattccggagggcgcttccagctagattttcaaccagatgggaatcttgtgttcactgctaagaaaccttttcattcaactgcaactaccactgggactattccaggtagtgaaggtcgacaactggtcttcaatgagtcgggcaacttctatattctgcgagtgaatggtggacatttcactttcacagatgaggaacgttcagcaagggactactatcttcgtacaactctcagctttgatggggttttggctcaatatttcctcccaaagatttccaatggcaatgaaagctgggctgctctttggtcagatccgcctaatatttgccaaaaaattaagatgaattcgggtcctggtatttgtggttacaacagtatctgcactctcaaagcagataggaggccatcctgtgaatgcccaacaggatactctttacttgatccagcagatgcatacgggaactgttatccagattccaaacaaggctgtgaagatgagcttagttatacaaaagatctatatgatgttcaggtgcgagcaaatactgattggcttacctccagttatgtgcagttaaatgcttctactgctgacacatgcagtcaatcttgcttggaagattgtttgtgtgctgttgctgtttacggcaatgaaacctgttggaaaaagaagtttccactctcatatgggagagaagacagcacccttaatgcaaagaccttcatcaaattcaggaacgacacttcagctctacaagttccggatgataagaagaagagccagaccactagggtacgtttgttgtcagttcttctgagcacctctgtctttggtaattttatattagctgctgcagttatttttctgggattttttttcactttccggaagaaacatgtaaggtttgcacaaaatgatttggacacaaaattgcgtttctttagtcagaaggagcttgaagaagctacaaatggattccatgaagaactaggaaaggcaagcttcctatttggtgatgagaaacccagttggaggcaacgtatggaaattgcttatggtgttgcgaaagggcttctatatttgcatgaagagtgttccacccaaatcatcctctgtgatataaagcctcagaaaatacttctggatgatcattacaatgcttggatctttaattttggcttgtcgaaacttctgatgatgaatgagagccagacatatactgtcattagaggaactaaagggagaagtgttgatacggataataccagcgaagagaaagcaattttaaccgactgggtttataattgttaccaagacggacttttagatgaggttctaaatcaccaagtcaatgccttggatgacaagactgagctggaaaagacagtgatgattgctatttggtgtatccaagaagaccgatttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

640

Amino Acids

71.51

Weight (kDa)

5.59

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1794
Acc36I	ACCTGC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	607
AccIII	TCCGGA	3 cut(s)	494, 1252, 1377
AciI	CCGC	1 cut(s)	806
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	4 cut(s)	238, 797, 926, 1664
AcsI	RAATTY	3 cut(s)	475, 835, 1220
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	3 cut(s)	200, 715, 1287
AfiI	CCNNNNNNNGG	1 cut(s)	1524
AflIII	ACRYGT	1 cut(s)	1387
AgsI	TTSAA	7 cut(s)	134, 247, 409, 521, 567, 622, 1451
AhdI	GACNNNNNGTC	1 cut(s)	614
AjnI	CCWGG	2 cut(s)	592, 844
Alw21I	GWGCWC	1 cut(s)	1313
Alw26I	GTCTC	2 cut(s)	395, 476
AlwI	GGATC	4 cut(s)	238, 797, 926, 1664
AlwNI	CAGNNNCTG	2 cut(s)	485, 870
Ama87I	CYCGRG	1 cut(s)	434
Aor13HI	TCCGGA	3 cut(s)	494, 1252, 1377
AoxI	GGCC	1 cut(s)	893
ApeKI	GCWGC	3 cut(s)	788, 1340, 1343
ApoI	RAATTY	3 cut(s)	475, 835, 1220
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	842
AsuC2I	CCSGG	2 cut(s)	435, 436
AsuHPI	GGTGA	3 cut(s)	116, 1517, 1826
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	842
AxyI	CCTNAGG	1 cut(s)	225
BaeI	ACNNNNGTAYC	4 cut(s)	850, 883, 1277, 1310
BarI	GAAGNNNNNNTAC	2 cut(s)	1729, 1761
BbsI	GAAGAC	4 cut(s)	459, 610, 1194, 1914
Bbv12I	GWGCWC	1 cut(s)	1313
BbvI	GCAGC	3 cut(s)	775, 1327, 1330
BccI	CCATC	4 cut(s)	106, 521, 725, 904
BceAI	ACGGC	1 cut(s)	1153
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	594, 846
BciVI	GTATCC	3 cut(s)	205, 911, 1910
BclI	TGATCA	1 cut(s)	1639
BcnI	CCSGG	2 cut(s)	435, 436
BcoDI	GTCTC	2 cut(s)	395, 476
BfaI	CTAG	5 cut(s)	371, 417, 512, 1281, 1481
BfmI	CTRYAG	3 cut(s)	69, 189, 1344
BfoI	RGCGCY	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	65
BfuI	GTATCC	3 cut(s)	205, 911, 1910
BglII	AGATCT	1 cut(s)	1006
BisI	GCNGC	3 cut(s)	789, 1341, 1344
BlsI	GCNGC	3 cut(s)	790, 1342, 1345
Bme1390I	CCNGG	4 cut(s)	435, 436, 594, 846
Bme18I	GGWCC	1 cut(s)	842
BmeRI	GACNNNNNGTC	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	4 cut(s)	435, 436, 594, 846
BmrI	ACTGGG	3 cut(s)	591, 1512, 1795
BmsI	GCATC	2 cut(s)	343, 931
BmuI	ACTGGG	3 cut(s)	591, 1512, 1795
BpiI	GAAGAC	4 cut(s)	459, 610, 1194, 1914
BpmI	CTGGAG	1 cut(s)	1036
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	2 cut(s)	435, 436
BsaAI	YACGTR	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	434, 1848
BsaWI	WCCGGW	3 cut(s)	494, 1252, 1377
BsaXI	ACNNNNNCTCC	2 cut(s)	1516, 1546
Bsc4I	CCNNNNNNNGG	1 cut(s)	1524
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	5 cut(s)	586, 618, 1053, 1518, 1790
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	2 cut(s)	781, 1147
Bse8I	GATNNNNATC	1 cut(s)	531
BseAI	TCCGGA	3 cut(s)	494, 1252, 1377
BseBI	CCWGG	2 cut(s)	594, 846
BseDI	CCNNGG	2 cut(s)	434, 1848
BseGI	GGATG	6 cut(s)	299, 896, 1261, 1599, 1642, 1858
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	1524
BseMI	GCAATG	2 cut(s)	781, 1147
BseMII	CTCAG	4 cut(s)	736, 1298, 1634, 1854
BseNI	ACTGG	5 cut(s)	586, 618, 1053, 1518, 1790
BseRI	GAGGAG	2 cut(s)	73, 468
BseXI	GCAGC	3 cut(s)	775, 1327, 1330
BseYI	CCCAGC	1 cut(s)	783
BsgI	GTGCAG	3 cut(s)	204, 856, 1082
BshFI	GGCC	1 cut(s)	895
BsiHKAI	GWGCWC	1 cut(s)	1313
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	5 cut(s)	357, 435, 495, 1253, 1378
BslFI	GGGAC	2 cut(s)	598, 713
BslI	CCNNNNNNNGG	1 cut(s)	1524
BsmAI	GTCTC	2 cut(s)	395, 476
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	598, 713
BsmI	GAATGC	2 cut(s)	253, 911
BsnI	GGCC	1 cut(s)	895
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	1313
Bsp13I	TCCGGA	3 cut(s)	494, 1252, 1377
Bsp143I	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
BspACI	CCGC	1 cut(s)	806
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	4 cut(s)	735, 1299, 1633, 1855
BspEI	TCCGGA	3 cut(s)	494, 1252, 1377
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	1 cut(s)	1348
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	4 cut(s)	238, 797, 926, 1664
BspQI	GCTCTTC	1 cut(s)	1262
BsrDI	GCAATG	2 cut(s)	781, 1147
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	5 cut(s)	586, 618, 1053, 1518, 1790
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	434, 1848
BssMI	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
BssT1I	CCWWGG	1 cut(s)	1848
Bst2UI	CCWGG	2 cut(s)	594, 846
Bst4CI	ACNGT	7 cut(s)	238, 257, 465, 866, 956, 1714, 1879
Bst6I	CTCTTC	3 cut(s)	1262, 1575, 1758
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	4 cut(s)	27, 219, 1029, 1492
BstDEI	CTNAG	7 cut(s)	225, 549, 722, 992, 1307, 1620, 1863
BstF5I	GGATG	6 cut(s)	299, 896, 1261, 1599, 1642, 1858
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	6 cut(s)	233, 805, 934, 1009, 1642, 1659
BstMAI	GTCTC	2 cut(s)	395, 476
BstMBI	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 386, 508, 780, 1079
BstNI	CCWGG	2 cut(s)	594, 846
BstNSI	RCATGY	2 cut(s)	1092, 1391
BstSCI	CCNGG	4 cut(s)	433, 434, 592, 844
BstSFI	CTRYAG	3 cut(s)	69, 189, 1344
BstSNI	TACGTA	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	775, 1327, 1330
BstV2I	GAAGAC	4 cut(s)	459, 610, 1194, 1914
BstX2I	RGATCY	3 cut(s)	802, 1006, 1656
BstYI	RGATCY	3 cut(s)	802, 1006, 1656
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	3 cut(s)	205, 911, 1910
BsuRI	GGCC	1 cut(s)	895
BtsCI	GGATG	6 cut(s)	299, 896, 1261, 1599, 1642, 1858
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	5 cut(s)	243, 262, 543, 579, 1884
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	4 cut(s)	27, 219, 1029, 1492
CaiI	CAGNNNCTG	2 cut(s)	485, 870
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	842
Cfr9I	CCCGGG	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	199, 714, 1286
CviAII	CATG	7 cut(s)	87, 338, 346, 1089, 1388, 1472, 1577
CviQI	GTAC	3 cut(s)	199, 714, 1286
DdeI	CTNAG	7 cut(s)	225, 549, 722, 992, 1307, 1620, 1863
DpnI	GATC	6 cut(s)	232, 804, 933, 1008, 1641, 1658
DpnII	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
DriI	GACNNNNNGTC	1 cut(s)	614
Eam1104I	CTCTTC	3 cut(s)	1262, 1575, 1758
Eam1105I	GACNNNNNGTC	1 cut(s)	614
EarI	CTCTTC	3 cut(s)	1262, 1575, 1758
EciI	GGCGGA	1 cut(s)	795
Eco105I	TACGTA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	1848
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	1221
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	842
EcoRI	GAATTC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	592, 844
EcoT14I	CCWWGG	1 cut(s)	1848
EcoT22I	ATGCAT	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	1848
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	7 cut(s)	90, 341, 349, 1092, 1391, 1475, 1580
FalI	AAGNNNNNCTT	6 cut(s)	975, 1007, 1478, 1510, 1797, 1829
FaqI	GGGAC	2 cut(s)	598, 713
FatI	CATG	7 cut(s)	86, 337, 345, 1088, 1387, 1471, 1576
FauNDI	CATATG	1 cut(s)	1177
FbaI	TGATCA	1 cut(s)	1639
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	3 cut(s)	789, 1341, 1344
FokI	GGATG	6 cut(s)	286, 883, 1268, 1586, 1649, 1865
Fsp4HI	GCNGC	3 cut(s)	789, 1341, 1344
FspBI	CTAG	5 cut(s)	371, 417, 512, 1281, 1481
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	3 cut(s)	789, 1341, 1344
GsaI	CCCAGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	1036
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	895
HapII	CCGG	5 cut(s)	357, 435, 495, 1253, 1378
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	7 cut(s)	90, 341, 349, 1092, 1391, 1475, 1580
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	608
HindII	GTYRAC	1 cut(s)	608
HindIII	AAGCTT	1 cut(s)	1492
HinfI	GANTC	5 cut(s)	412, 532, 626, 965, 1467
HpaII	CCGG	5 cut(s)	357, 435, 495, 1253, 1378
HphI	GGTGA	3 cut(s)	116, 1517, 1826
Hpy166II	GTNNAC	5 cut(s)	241, 543, 608, 662, 1135
Hpy188I	TCNGA	6 cut(s)	481, 802, 1308, 1440, 1623, 1686
Hpy8I	GTNNAC	5 cut(s)	241, 543, 608, 662, 1135
HpyAV	CCTTC	3 cut(s)	596, 1222, 1435
HpyCH4III	ACNGT	7 cut(s)	238, 257, 465, 866, 956, 1714, 1879
HpyCH4IV	ACGT	5 cut(s)	201, 404, 688, 1288, 1531
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 386, 508, 780, 1079
HpyF3I	CTNAG	7 cut(s)	225, 549, 722, 992, 1307, 1620, 1863
HpySE526I	ACGT	5 cut(s)	201, 404, 688, 1288, 1531
Hsp92II	CATG	7 cut(s)	90, 341, 349, 1092, 1391, 1475, 1580
HspAI	GCGC	1 cut(s)	502
Kpn2I	TCCGGA	3 cut(s)	494, 1252, 1377
Ksp22I	TGATCA	1 cut(s)	1639
Kzo9I	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
LguI	GCTCTTC	1 cut(s)	1262
LmnI	GCTCC	1 cut(s)	1444
Lsp1109I	GCAGC	3 cut(s)	775, 1327, 1330
LweI	GCATC	2 cut(s)	343, 931
MaeI	CTAG	5 cut(s)	371, 417, 512, 1281, 1481
MaeII	ACGT	5 cut(s)	201, 404, 688, 1288, 1531
MaeIII	GTNAC	5 cut(s)	77, 104, 359, 857, 1799
MalI	GATC	6 cut(s)	232, 804, 933, 1008, 1641, 1658
MboI	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
MflI	RGATCY	3 cut(s)	802, 1006, 1656
MhlI	GDGCHC	1 cut(s)	1313
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	1133, 1502
Mph1103I	ATGCAT	1 cut(s)	946
MroI	TCCGGA	3 cut(s)	494, 1252, 1377
MseI	TTAA	5 cut(s)	828, 1067, 1200, 1662, 1778
MslI	CAYNNNNRTG	1 cut(s)	1647
MspI	CCGG	5 cut(s)	357, 435, 495, 1253, 1378
MspR9I	CCNGG	4 cut(s)	435, 436, 594, 846
Mva1269I	GAATGC	2 cut(s)	253, 911
MvaI	CCWGG	2 cut(s)	594, 846
MwoI	GCNNNNNNNGC	5 cut(s)	56, 386, 508, 780, 1079
NciI	CCSGG	2 cut(s)	435, 436
NdeI	CATATG	1 cut(s)	1177
NdeII	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
NlaIII	CATG	7 cut(s)	90, 341, 349, 1092, 1391, 1475, 1580
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	2 cut(s)	1092, 1391
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	1387
PciSI	GCTCTTC	1 cut(s)	1262
PctI	GAATGC	2 cut(s)	253, 911
PfeI	GAWTC	4 cut(s)	412, 532, 965, 1467
PkrI	GCNGC	3 cut(s)	790, 1342, 1345
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	842
PscI	ACATGT	1 cut(s)	1387
PsiI	TTATAA	1 cut(s)	1794
Psp1406I	AACGTT	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	842
Psp6I	CCWGG	2 cut(s)	592, 844
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	2 cut(s)	592, 844
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	842
PspPPI	RGGWCCY	1 cut(s)	842
PstI	CTGCAG	1 cut(s)	1348
PstNI	CAGNNNCTG	2 cut(s)	485, 870
PsuI	RGATCY	3 cut(s)	802, 1006, 1656
RsaI	GTAC	3 cut(s)	200, 715, 1287
RsaNI	GTAC	3 cut(s)	199, 714, 1286
RseI	CAYNNNNRTG	1 cut(s)	1647
SalI	GTCGAC	1 cut(s)	606
SapI	GCTCTTC	1 cut(s)	1262
SaqAI	TTAA	5 cut(s)	828, 1067, 1200, 1662, 1778
SatI	GCNGC	3 cut(s)	789, 1341, 1344
Sau3AI	GATC	6 cut(s)	230, 802, 931, 1006, 1639, 1656
Sau96I	GGNCC	1 cut(s)	842
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	4 cut(s)	435, 436, 594, 846
SduI	GDGCHC	1 cut(s)	1313
SfaNI	GCATC	2 cut(s)	343, 931
SfcI	CTRYAG	3 cut(s)	69, 189, 1344
SinI	GGWCC	1 cut(s)	842
SmaI	CCCGGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	1647
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
SnaBI	TACGTA	1 cut(s)	202
SrfI	GCCCGGGC	1 cut(s)	436
SsiI	CCGC	1 cut(s)	806
SspI	AATATT	2 cut(s)	749, 814
SspMI	CTAG	5 cut(s)	371, 417, 512, 1281, 1481
StyD4I	CCNGG	4 cut(s)	433, 434, 592, 844
StyI	CCWWGG	1 cut(s)	1848
TaaI	ACNGT	7 cut(s)	238, 257, 465, 866, 956, 1714, 1879
TaiI	ACGT	5 cut(s)	204, 407, 691, 1291, 1534
TaqI	TCGA	3 cut(s)	472, 607, 1676
TfiI	GAWTC	4 cut(s)	412, 532, 965, 1467
Tru1I	TTAA	5 cut(s)	828, 1067, 1200, 1662, 1778
Tru9I	TTAA	5 cut(s)	828, 1067, 1200, 1662, 1778
TscAI	CASTG	5 cut(s)	243, 262, 550, 586, 1884
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	788, 1340, 1343
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	9 cut(s)	362, 551, 792, 848, 1158, 1204, 1488, 1593, 1706
TspGWI	ACGGA	2 cut(s)	1763, 1824
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	5 cut(s)	243, 262, 550, 586, 1884
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	3 cut(s)	475, 835, 1220
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	1092, 1391
XmaI	CCCGGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	5 cut(s)	371, 417, 512, 1281, 1481
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.