Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Reverse (-)

83660119 .. 83660629

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG531400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCTATCACAACCAAGGTTGATGTTTACAGCTATGGCATTTTGTTACTAGAGATTATTTGCTTAAGGAAGTATTTTGAAGCAGAGGCAGAGGATGAAGATCAAATGATACTAGCTGACTGGGCATATGACTGCTACGTGCAAAAGAAATTGCGTCTACTGTTTGACAATGATTATGAGGCAGTGCATGATATCAAGAATATGGAGAAGTACTTGATGATTGCATTGTGGTGCATCCAAGAGGATCCGTCACTGAGACCCACAACGAAGAAACTCACATTGATGCTTGAAGGAACTGTTGACGTCTCAATTCCACCAGATCCATCCTCATTTGCAAGTTCAATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

116

Amino Acids

13.45

Weight (kDa)

4.42

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 92	3.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	157
AclWI	GGATC	3 cut(s)	239, 252, 314
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	212
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	80, 290, 342
AluBI	AGCT	2 cut(s)	33, 116
AluI	AGCT	2 cut(s)	33, 116
Alw26I	GTCTC	2 cut(s)	250, 310
AlwI	GGATC	3 cut(s)	239, 252, 314
BamHI	GGATCC	1 cut(s)	244
BccI	CCATC	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	250, 310
BfaI	CTAG	2 cut(s)	50, 113
BfrI	CTTAAG	1 cut(s)	64
BmcAI	AGTACT	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	243, 273
BmuI	ACTGGG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	100, 234, 323
BseJI	GATNNNNATC	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	250, 310
BsmBI	CGTCTC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	100, 244, 319
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	239, 252, 314
BspTI	CTTAAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	100, 244, 319
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	162, 298
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	100, 234, 323
BstKTI	GATC	3 cut(s)	103, 247, 322
BstMAI	GTCTC	2 cut(s)	250, 310
BstMBI	GATC	3 cut(s)	100, 244, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	244, 319
BstYI	RGATCY	2 cut(s)	244, 319
BtsCI	GGATG	3 cut(s)	100, 234, 323
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	189, 251
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	2 cut(s)	33, 116
CviKI_1	RGCY	2 cut(s)	33, 116
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	3 cut(s)	102, 246, 321
DpnII	GATC	3 cut(s)	100, 244, 319
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	1 cut(s)	191
FaiI	YATR	6 cut(s)	36, 127, 129, 177, 189, 203
FatI	CATG	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	157
FokI	GGATG	3 cut(s)	107, 221, 310
FspBI	CTAG	2 cut(s)	50, 113
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	28, 158, 301
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	3 cut(s)	28, 158, 301
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	162, 298
HpyCH4IV	ACGT	2 cut(s)	138, 303
HpyCH4V	TGCA	5 cut(s)	142, 187, 224, 234, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	138, 303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	100, 244, 319
LpnPI	CCDG	2 cut(s)	106, 330
LweI	GCATC	2 cut(s)	243, 273
MaeI	CTAG	2 cut(s)	50, 113
MaeII	ACGT	2 cut(s)	138, 303
MaeIII	GTNAC	2 cut(s)	45, 249
MalI	GATC	3 cut(s)	102, 246, 321
MboI	GATC	3 cut(s)	100, 244, 319
MboII	GAAGA	2 cut(s)	110, 280
MflI	RGATCY	2 cut(s)	244, 319
MluCI	AATT	2 cut(s)	149, 309
MnlI	CCTC	5 cut(s)	79, 85, 172, 235, 337
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	2 cut(s)	229, 281
MspCI	CTTAAG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	3 cut(s)	100, 244, 319
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	249
Ppu21I	YACGTR	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	2 cut(s)	244, 319
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	229, 281
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	100, 244, 319
ScaI	AGTACT	1 cut(s)	212
SetI	ASST	5 cut(s)	21, 35, 118, 141, 306
SfaNI	GCATC	2 cut(s)	243, 273
SmiMI	CAYNNNNRTG	2 cut(s)	229, 281
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	149, 309
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	50, 113
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	162, 298
TaiI	ACGT	2 cut(s)	141, 306
TasI	AATT	2 cut(s)	149, 309
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	189, 258
TseFI	GTSAC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	189, 258
Vha464I	CTTAAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	2 cut(s)	50, 113
ZraI	GACGTC	1 cut(s)	304
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.