Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000130

Physical Location & Seq

Genomic Coordinates Forward (+)

4893124 .. 4899938

Gene Structure 6815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATGGCATCAAGGAGTTGGAGAAGTACTTGATGATTGCATTTTGGTGCATTCAAGAGGATCCATCGGTAAGACCTACCATAAAGAAAGTGATACAGATGCTTGAAGGCACCTTTGGGATTGCTGTGTCTGTGAGAGGAAGCACTTCCGAACTTGCTTGTGAGAGGAACCACTTCCAAACTTGCTGTGAGGAGAAGCAGCTGAGGTGTTTGAAACCGGAAGCCCAGTTTCTTGTTGTTGTCTTCAAATCAATGGGAGAAACAAGAAAGGACTCTCCTTTACATCACTACCCTACGTCACCATTGCAATGGACTCTGAGTGCATACCCATTCAATGTTCTCCCAGCAAGTATTCCCATCCACATGGCTATGTCGAATGTGGACTCAACCAACCCACCAGTAGTTTCTCCATTTGCAGGTCCATGCGGCCCCCCCCCCGGGGATGCTCCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

6.06

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43780
malus_domestica	MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica	Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis	pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis	RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata	RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora	Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii	Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa	Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha	Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana	Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	56, 69
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	4 cut(s)	416, 437, 438, 439
AgsI	TTSAA	5 cut(s)	56, 107, 214, 247, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
AlwI	GGATC	2 cut(s)	56, 69
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	199
Asp700I	GAANNNNTTC	2 cut(s)	145, 173
AspS9I	GGNCC	2 cut(s)	419, 428
AsuC2I	CCSGG	2 cut(s)	438, 439
AsuHPI	GGTGA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	73, 365
BcnI	CCSGG	2 cut(s)	438, 439
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	200, 427
BlsI	GCNGC	2 cut(s)	201, 428
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	438, 439
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	419, 428
BmiI	GGNNCC	4 cut(s)	63, 112, 170, 430
BmrFI	CCNGG	2 cut(s)	438, 439
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	18, 90, 433
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	438, 439
BsaJI	CCNNGG	3 cut(s)	436, 437, 438
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	4 cut(s)	416, 437, 438, 439
Bse1I	ACTGG	2 cut(s)	226, 398
Bse3DI	GCAATG	2 cut(s)	302, 314
BseDI	CCNNGG	3 cut(s)	436, 437, 438
BseGI	GGATG	3 cut(s)	10, 357, 448
BseLI	CCNNNNNNNGG	4 cut(s)	416, 437, 438, 439
BseMI	GCAATG	2 cut(s)	302, 314
BseMII	CTCAG	2 cut(s)	194, 308
BseNI	ACTGG	2 cut(s)	226, 398
BseRI	GAGGAG	2 cut(s)	206, 438
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	429
BshNI	GGYRCC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	218, 438
BslI	CCNNNNNNNGG	4 cut(s)	416, 437, 438, 439
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	2 cut(s)	195, 309
BspLI	GGNNCC	4 cut(s)	63, 112, 170, 430
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	56, 69
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	302, 314
BsrI	ACTGG	2 cut(s)	226, 398
BssECI	CCNNGG	3 cut(s)	436, 437, 438
BssMI	GATC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	203, 317
BstF5I	GGATG	3 cut(s)	10, 357, 448
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	436, 437
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	2 cut(s)	309, 364
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	10, 357, 448
BveI	ACCTGC	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	419, 428
Cfr9I	CCCGGG	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	364, 423
CviJI	RGCY	4 cut(s)	202, 224, 368, 429
CviKI_1	RGCY	4 cut(s)	202, 224, 368, 429
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	203, 317
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	437
FaeI	CATG	2 cut(s)	367, 426
FaiI	YATR	5 cut(s)	83, 325, 365, 371, 424
FatI	CATG	2 cut(s)	363, 422
Fnu4HI	GCNGC	2 cut(s)	200, 427
FokI	GGATG	2 cut(s)	17, 344
Fsp4HI	GCNGC	2 cut(s)	200, 427
GluI	GCNGC	2 cut(s)	200, 427
GsaI	CCCAGC	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	2 cut(s)	218, 438
Hin1II	CATG	2 cut(s)	367, 426
HinfI	GANTC	3 cut(s)	272, 313, 383
HpaII	CCGG	2 cut(s)	218, 438
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	151, 318
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	5 cut(s)	41, 51, 307, 323, 416
HpyF3I	CTNAG	2 cut(s)	203, 317
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	367, 426
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	6 cut(s)	231, 239, 357, 402, 411, 451
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	3 cut(s)	18, 90, 433
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	235
MflI	RGATCY	1 cut(s)	61
MlyI	GAGTC	3 cut(s)	266, 307, 377
MnlI	CCTC	5 cut(s)	52, 131, 159, 184, 198
MroXI	GAANNNNTTC	2 cut(s)	145, 173
MslI	CAYNNNNRTG	4 cut(s)	46, 307, 362, 368
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	218, 438
MspR9I	CCNGG	2 cut(s)	438, 439
Mva1269I	GAATGC	1 cut(s)	51
NciI	CCSGG	2 cut(s)	438, 439
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	367, 426
NlaIV	GGNNCC	4 cut(s)	63, 112, 170, 430
NmuCI	GTSAC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	51
PdmI	GAANNNNTTC	2 cut(s)	145, 173
PkrI	GCNGC	2 cut(s)	201, 428
PleI	GAGTC	3 cut(s)	266, 307, 377
PpsI	GAGTC	3 cut(s)	266, 307, 377
PspFI	CCCAGC	1 cut(s)	343
PspN4I	GGNNCC	4 cut(s)	63, 112, 170, 430
PspPI	GGNCC	2 cut(s)	419, 428
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	4 cut(s)	46, 307, 362, 368
SatI	GCNGC	2 cut(s)	200, 427
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	419, 428
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	3 cut(s)	266, 307, 377
ScrFI	CCNGG	2 cut(s)	438, 439
SetI	ASST	6 cut(s)	79, 116, 204, 209, 299, 421
SfaNI	GCATC	3 cut(s)	18, 90, 433
SinI	GGWCC	1 cut(s)	419
SmaI	CCCGGG	1 cut(s)	439
SmiMI	CAYNNNNRTG	4 cut(s)	46, 307, 362, 368
SsiI	CCGC	1 cut(s)	426
StyD4I	CCNGG	2 cut(s)	436, 437
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	374
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	297
TspMI	CCCGGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	419
XmaI	CCCGGG	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	145, 173
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.