RchiOBHm_Chr7g0223671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000130
Physical Location & Seq
Reverse (-)
45502756 .. 45503817
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20026

Sequence Viewer

Length: 207 bp
ATGGGTCGAGTTCTTCTCTTGAGATTGAATTCAATTCATGAAGTACTCATTTCAATCTTGAGCACGTTGAAGCCATCAAGGAGAGAGAGGCAAAAGGAGAACATATGCAATCTGGGTACCTCGCCCAGCCCAACACCAACGCCGCCCAAGCTGCCCAGCGCCCGCCGAAACCCGCCTATCTGTTCTGGGTATTTGAGTTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.64

Weight (kDa)

10.88

Isoelectric Point (pI)

71.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 3 cut(s) 143, 163, 173
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 2 cut(s) 45, 118
AgsI TTSAA 4 cut(s) 28, 33, 54, 70
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 2 cut(s) 143, 152
BlsI GCNGC 2 cut(s) 144, 153
BmcAI AGTACT 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 118
BplI GAGNNNNNCTC 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 40, 79
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 2 cut(s) 125, 155
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 65
BspACI CCGC 3 cut(s) 143, 163, 173
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 148, 151
BstV1I GCAGC 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 163
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 44, 117
CviAII CATG 1 cut(s) 38
CviJI RGCY 3 cut(s) 73, 129, 151
CviKI_1 RGCY 3 cut(s) 73, 129, 151
CviQI GTAC 2 cut(s) 44, 117
EcoRI GAATTC 1 cut(s) 28
FaeI CATG 1 cut(s) 41
FaiI YATR 3 cut(s) 39, 104, 106
FatI CATG 1 cut(s) 37
FauI CCCGC 2 cut(s) 170, 180
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 143, 152
Fsp4HI GCNGC 2 cut(s) 143, 152
GlaI GCGC 1 cut(s) 160
GluI GCNGC 2 cut(s) 143, 152
GsaI CCCAGC 2 cut(s) 129, 159
HaeII RGCGCY 1 cut(s) 162
HhaI GCGC 1 cut(s) 161
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
Hpy188III TCNNGA 3 cut(s) 19, 38, 58
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 151
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 159
KpnI GGTACC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 98, 139, 169, 171
Lsp1109I GCAGC 1 cut(s) 138
MaeII ACGT 1 cut(s) 65
MboII GAAGA 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 28, 33
MnlI CCTC 2 cut(s) 81, 130
MwoI GCNNNNNNNGC 2 cut(s) 148, 151
NdeI CATATG 1 cut(s) 104
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 118
PagI TCATGA 1 cut(s) 37
PkrI GCNGC 2 cut(s) 144, 153
PspFI CCCAGC 2 cut(s) 125, 155
PspN4I GGNNCC 1 cut(s) 118
RsaI GTAC 2 cut(s) 45, 118
RsaNI GTAC 2 cut(s) 44, 117
SatI GCNGC 2 cut(s) 143, 152
ScaI AGTACT 1 cut(s) 45
SduI GDGCHC 1 cut(s) 65
SetI ASST 3 cut(s) 68, 122, 153
SmlI CTYRAG 2 cut(s) 19, 58
SmoI CTYRAG 2 cut(s) 19, 58
Sse9I AATT 2 cut(s) 28, 33
SsiI CCGC 3 cut(s) 143, 163, 173
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 28, 33
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 145
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 26, 54
XapI RAATTY 1 cut(s) 28
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.