RchiOBHm_Chr1g0313471

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000130
Physical Location & Seq
Reverse (-)
538835 .. 539314
480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54428

Sequence Viewer

Length: 480 bp
ATGATTCATTCACAGCAAGGATTTCGGATTTCGGATTTCGGATTGGCAAAGCTTCTGCTAAGTGATCAAACTCTGACTCATACAGTCATTAGAGGGACCAGAGGGTATGTTGCACCAGAATGGTTCAGAAATACTCCCGTTACTGCGAAGGTTGATGTTTACAGTTATGGGGTGATGCTGTTGGAGATTATCTGCTGCAGGAGGAGCCTCGAAATGGAAAAGGAAAATGAAGAAGAAGTGATACTAACTGACTGGGTTTACGATTGCTACAAGCATAGGAGATTAAACAAGGTGATTGAGGACGATGAGGAGGCAGGAAATGACATGAAAAGGCTGGAGAGGCTAGTAATTGTGGCAATTTGGTGCATACAAGAGGATCCATCTTTGAGACCTACCATGAAGAAGGTTACACAAATGCTCGAAGGAGTGGTTGATGTATCTGTACCTCCAAGTCCTTCTCTTTTTAGTTCAATATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

159

Amino Acids

18.32

Weight (kDa)

5.26

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 138 2.5e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 140 6.6e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43780
malus_domestica MD03G1019500.v1.1 MD03G1019800.v1.1 MD03G1019900.v1.1 MD03G1020000.v1.1 MD03G1020200.v1.1 MD03G1020300.v1.1 MD05G1226500.v1.1 MD05G1226600.v1.1 MD05G1226700.v1.1 MD05G1226800.v1.1 MD09G1060200.v1.1 MD11G1021100.v1.1 MD11G1021300.v1.1 MD11G1021400.v1.1 MD11G1021500.v1.1 MD11G1024600.v1.1 MD11G1026700.v1.1
prunus_persica Prupe.6G016300_v2.0.a1 Prupe.6G016600_v2.0.a1 Prupe.6G016700_v2.0.a1 Prupe.6G017000_v2.0.a1 Prupe.6G017100_v2.0.a1 Prupe.6G017200_v2.0.a1 Prupe.6G017300_v2.0.a1 Prupe.6G017400_v2.0.a1 Prupe.6G017500_v2.0.a1
pyrus_communis pycom02g26630 pycom03g01670 pycom03g01710 pycom03g01720 pycom05g20850 pycom11g01710 pycom11g01730 pycom11g01740 pycom11g01960
rosa_chinensis RchiOBHm_Chr1g0313471 RchiOBHm_Chr1g0313491 RchiOBHm_Chr1g0313521 RchiOBHm_Chr1g0329041 RchiOBHm_Chr5g0077581 RchiOBHm_Chr5g0077681 RchiOBHm_Chr5g0077751 RchiOBHm_Chr5g0077771 RchiOBHm_Chr5g0078381 RchiOBHm_Chr5g0078421 RchiOBHm_Chr5g0078481 RchiOBHm_Chr5g0078491 RchiOBHm_Chr5g0078511 RchiOBHm_Chr5g0078561 RchiOBHm_Chr5g0078581 RchiOBHm_Chr5g0078621 RchiOBHm_Chr5g0078631 RchiOBHm_Chr5g0078641 RchiOBHm_Chr5g0078681 RchiOBHm_Chr5g0078741 RchiOBHm_Chr5g0078781 RchiOBHm_Chr5g0078791 RchiOBHm_Chr5g0078821 RchiOBHm_Chr5g0078851 RchiOBHm_Chr5g0078861 RchiOBHm_Chr5g0078881 RchiOBHm_Chr5g0078911 RchiOBHm_Chr5g0078921 RchiOBHm_Chr5g0078931 RchiOBHm_Chr5g0078951 RchiOBHm_Chr5g0079061 RchiOBHm_Chr5g0079071 RchiOBHm_Chr5g0079101 RchiOBHm_Chr5g0079111 RchiOBHm_Chr5g0079131 RchiOBHm_Chr5g0079151 RchiOBHm_Chr5g0079161 RchiOBHm_Chr5g0079211 RchiOBHm_Chr5g0079241 RchiOBHm_Chr7g0223671
rosa_laevigata RLG00000001266 RLG00000036708 RLG00000036719 RLG00000036772 RLG00000036773 RLG00000036776 RLG00000036780 RLG00000036781 RLG00000036783 RLG00000036788 RLG00000036790 RLG00000036792 RLG00000036794 RLG00000036797 RLG00000036798 RLG00000036800 RLG00000036801 RLG00000036802 RLG00000036803 RLG00000036805 RLG00000036807 RLG00000036808
rosa_multiflora Rmu_co7998958.1_g000001 Rmu_co8175864.1_g000001 Rmu_co8214884.1_g000001 Rmu_co8225446.1_g000001 Rmu_sc0000607.1_g000011 Rmu_sc0000607.1_g000012 Rmu_sc0000631.1_g000001 Rmu_sc0000631.1_g000003 Rmu_sc0000631.1_g000010 Rmu_sc0000631.1_g000012 Rmu_sc0000631.1_g000020 Rmu_sc0001347.1_g000014 Rmu_sc0002187.1_g000011 Rmu_sc0002187.1_g000014 Rmu_sc0002187.1_g000024 Rmu_sc0002187.1_g000025 Rmu_sc0003413.1_g000051 Rmu_sc0004140.1_g000002 Rmu_sc0004140.1_g000003 Rmu_sc0004140.1_g000015 Rmu_sc0004140.1_g000026 Rmu_sc0004140.1_g000036 Rmu_sc0004140.1_g000042 Rmu_sc0004140.1_g000046 Rmu_sc0004140.1_g000048 Rmu_sc0004277.1_g000002 Rmu_sc0008700.1_g000002 Rmu_sc0011280.1_g000001 Rmu_sc0011280.1_g000002 Rmu_sc0011280.1_g000009 Rmu_sc0012487.1_g000003 Rmu_sc0012487.1_g000007 Rmu_sc0012487.1_g000009 Rmu_sc0012931.1_g000001 Rmu_sc0012931.1_g000002 Rmu_sc0012931.1_g000009 Rmu_sc0015122.1_g000002 Rmu_sc0022488.1_g000001 Rmu_ssc0000425.1_g000018
rosa_roxburghii Rroxscaffold_164G00436380 Rroxscaffold_1G00003360 Rroxscaffold_1G00003370 Rroxscaffold_1G00003660 Rroxscaffold_1G00003790 Rroxscaffold_1G00003840 Rroxscaffold_1G00003950 Rroxscaffold_1G00004380 Rroxscaffold_4G00332170
rosa_rugosa Rorug05G0455800 Rorug05G0456500 Rorug05G0460800 Rorug05G0461000 Rorug05G0461200 Rorug05G0461200 Rorug05G0461300 Rorug05G0461600 Rorug05G0461700 Rorug05G0461900 Rorug05G0462000 Rorug05G0462400 Rorug05G0462500 Rorug05G0462800 Rorug05G0463200.1 Rorug05G0463300
rosa_samantha Rh1CG000600 Rh1CG008300 Rh1CG360600 Rh5AG509700 Rh5AG509800 Rh5AG510700 Rh5AG515000 Rh5AG515600 Rh5BG531300 Rh5BG531400 Rh5BG533600 Rh5BG538200 Rh5BG538300 Rh5BG538400 Rh5BG538500 Rh5BG539100 Rh5BG539200 Rh5BG539400 Rh5DG545100 Rh5DG549000 Rh5DG549200 Rh5DG549500 Rh5DG549600 Rh5DG549800 Rh5DG549900 Rh5DG550000 Rh5DG550200 Rh5DG550300 Rh7AG436900 Rh7CG456800
rosa_wichuraiana Rw0G003110 Rw0G003120 Rw0G005240 Rw0G023800 Rw0G023830 Rw1G007840 Rw5G000030 Rw5G047760 Rw5G047780 Rw5G047810 Rw5G047900 Rw5G047920 Rw5G047970 Rw5G047980 Rw5G048000 Rw5G048010 Rw5G048030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 371, 384
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 471
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 371, 384
ApeKI GCWGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 184, 304
AvaII GGWCC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 376
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 97, 206, 378
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 217, 323
BseXI GCAGC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 382
Bsp143I GATC 2 cut(s) 64, 376
BspLI GGNNCC 3 cut(s) 97, 206, 378
BspMAI CTGCAG 1 cut(s) 200
BspPI GGATC 2 cut(s) 371, 384
BspTNI GGTCTC 1 cut(s) 382
BsrI ACTGG 1 cut(s) 257
BssMI GATC 2 cut(s) 64, 376
Bst4CI ACNGT 2 cut(s) 85, 164
BstDEI CTNAG 1 cut(s) 59
BstKTI GATC 2 cut(s) 67, 379
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 64, 376
BstMWI GCNNNNNNNGC 2 cut(s) 204, 340
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 443
CviAII CATG 2 cut(s) 325, 397
CviJI RGCY 4 cut(s) 52, 207, 334, 343
CviKI_1 RGCY 4 cut(s) 52, 207, 334, 343
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 66, 378
DpnII GATC 2 cut(s) 64, 376
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 96
FaeI CATG 2 cut(s) 328, 400
FaiI YATR 8 cut(s) 81, 108, 168, 276, 326, 368, 398, 475
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 324, 396
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 344
GluI GCNGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 356
Hin1II CATG 2 cut(s) 328, 400
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 2 cut(s) 4, 76
HphI GGTGA 2 cut(s) 184, 304
Hpy166II GTNNAC 2 cut(s) 160, 259
Hpy188I TCNGA 5 cut(s) 27, 34, 41, 75, 128
Hpy8I GTNNAC 2 cut(s) 160, 259
HpyAV CCTTC 4 cut(s) 142, 397, 416, 465
HpyCH4III ACNGT 2 cut(s) 85, 164
HpyCH4V TGCA 3 cut(s) 113, 198, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 340
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 2 cut(s) 328, 400
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 64, 376
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 112, 129, 184, 238, 300, 320
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 139, 406
MalI GATC 2 cut(s) 66, 378
MboI GATC 2 cut(s) 64, 376
MboII GAAGA 3 cut(s) 242, 245, 412
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 348, 357
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 162
MseI TTAA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 204, 340
NdeII GATC 2 cut(s) 64, 376
NlaIII CATG 2 cut(s) 328, 400
NlaIV GGNNCC 3 cut(s) 97, 206, 378
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 97, 206, 378
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 64, 376
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 70
SetI ASST 6 cut(s) 54, 153, 294, 394, 408, 448
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 196
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 2 cut(s) 348, 357
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 85, 164
TaqI TCGA 2 cut(s) 210, 420
TasI AATT 2 cut(s) 348, 357
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 243, 341, 413
VpaK11BI GGWCC 1 cut(s) 96
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.