AT1G15790

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000315
Physical Location & Seq
Reverse (-)
5438171 .. 5440131
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15790.1

Sequence Viewer

Length: 540 bp
ATGGACACAACAGGAGACTGGAGAACTCAATTTCCATCTGCTTCACGCTCGAGAATCGTCAATAAGATAATGGAAACACAGTTGAAGCAACTTCCATTTATTAGACCAGAGGGAACTAACGAGCTTAGGAAAATTGCAGTCAGATTTGAGGAGAAACTATTCAACAATGCCTCTAATCAGACTGAGTACCTTCGTCAAATATGTATGAAGATGCTGAATATGGAGACTAAATCACAAAATGCAGCTGGTTCTTCCTCCGCTGATGATAACACCCCACCGTTGGTTCCAGAGCCTTCTGTTCCGAACAATGAACCTGCCGTGAACACTGGTGACTGGAGAACTCAACAGCCACAGGATTCACGCCAGAAGAATATCAATGCTTTATTGGACACACTAAAGAAAATTGTTCCACATTCTGGGAAAGAAGGAATTGACGAGCTCATGAGAATTGCTGTCAGCTTAGAGGAGTTGATTTTCAACTCTGCTATAAACCAGGAGGATTACCTTGGCAAGATATCCTTAAAGATGCGGACTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

179

Amino Acids

20.32

Weight (kDa)

6.62

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 4 - 84 8.3e-32 KIX domain
KIX_2 PF16987 109 - 179 1.3e-23 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 416
AciI CCGC 2 cut(s) 258, 529
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 280, 416
AgsI TTSAA 3 cut(s) 85, 163, 478
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 2 cut(s) 16, 48
AluBI AGCT 4 cut(s) 124, 245, 439, 459
AluI AGCT 4 cut(s) 124, 245, 439, 459
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 9, 218
Ama87I CYCGRG 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 49
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 254
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 494
BcoDI GTCTC 2 cut(s) 9, 218
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 201, 516
BpmI CTGGAG 2 cut(s) 40, 355
Bpu10I CCTNAGC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 505
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 416
Bse1I ACTGG 3 cut(s) 23, 331, 338
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 505
BseLI CCNNNNNNNGG 2 cut(s) 280, 416
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 23, 331, 338
BseRI GAGGAG 2 cut(s) 164, 479
BseXI GCAGC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 280, 416
BsmAI GTCTC 2 cut(s) 9, 218
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 441
BspACI CCGC 2 cut(s) 258, 529
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 322
BsrI ACTGG 3 cut(s) 23, 331, 338
BssECI CCNNGG 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 81, 279
BstDEI CTNAG 3 cut(s) 125, 183, 460
BstMAI GTCTC 2 cut(s) 9, 218
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 322
CciI TCATGA 1 cut(s) 441
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 442
CviJI RGCY 6 cut(s) 124, 245, 292, 349, 439, 459
CviKI_1 RGCY 6 cut(s) 124, 245, 292, 349, 439, 459
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 125, 183, 460
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 441
Eco32I GATATC 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 492
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 1 cut(s) 445
FaiI YATR 6 cut(s) 202, 206, 221, 443, 488, 536
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FatI CATG 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 2 cut(s) 40, 355
Hin1II CATG 1 cut(s) 445
HinfI GANTC 2 cut(s) 54, 356
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 143, 180, 303
Hpy188III TCNNGA 3 cut(s) 51, 287, 442
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 3 cut(s) 200, 303, 419
HpyCH4III ACNGT 2 cut(s) 81, 279
HpyCH4V TGCA 2 cut(s) 137, 242
HpyF3I CTNAG 3 cut(s) 125, 183, 460
Hsp92II CATG 1 cut(s) 445
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 2 cut(s) 201, 516
MaeIII GTNAC 1 cut(s) 329
MboII GAAGA 3 cut(s) 220, 243, 379
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 29, 132, 402, 429, 447
MnlI CCTC 6 cut(s) 103, 142, 181, 265, 457, 490
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 245, 260
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 49
PagI TCATGA 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 54, 356
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 441
SetI ASST 7 cut(s) 126, 192, 247, 316, 441, 461, 507
SfaNI GCATC 2 cut(s) 201, 516
Sfr274I CTCGAG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 5 cut(s) 29, 132, 402, 429, 447
SsiI CCGC 2 cut(s) 258, 529
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 2 cut(s) 81, 279
TaqI TCGA 1 cut(s) 50
TasI AATT 5 cut(s) 29, 132, 402, 429, 447
TfiI GAWTC 2 cut(s) 54, 356
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 221, 324
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 416
XhoI CTCGAG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.