FvH4_3g42320

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000315
Physical Location & Seq
Reverse (-)
35323428 .. 35326096
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42320.t1

Sequence Viewer

Length: 672 bp
ATGGATGCCAATATCAACAGTGATCAGAGGCCTTCACAGGCTGGAGAAGCCTCGAATGTAGCCGGCGATTGGAGGCTGTACTTAATGCCAGATGCAAGGCAAAGAATTGTCAACAAGATAATTGATACGTTGAAGAGGCATCTCCCCTTCTCAGGCCAAGAGGGGTTACATGAACCACATAGAATTGCTGCAAGGTTTGAGGAAAAGGTATATGCTGCTGCATCAAGCCAGTCGGATTATCTACGACGTATTTCTATTAAGATGCTTACCATGGAGGCCAAGAACGCAGCAACCAGTCCCCCGTCCAACCAGGAACGGCATCATGTCCTTGATGCTGAAATCAACAGTGATCAGAGGCCTCCACAGGCTGCAGAAGCCTTGAATGACGCCGGCGATTGGAGGATGTACTTAATGCCAGATGCAAGGCAAAGAATTGTCAACAAGATATTTGATACGTTGAAGAGGCATCTCCCCTTCGCAGGCCTGGAGGGGTTACATGAACTATATGCAATTGCTGCATGGTTTGAGGAAAGGGTGTATGCTAATGCATCAAGCCGGACGGATTATCTACTAAAAATTTCTTTAAAGATGCTTATCATGGAGTCCAGGGGATTCGGAGTTGTCCCCTCCAACCTGAAACGGCGTCGCGTCCTTGCTGGTAAACCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

224

Amino Acids

25.36

Weight (kDa)

9.3

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 22 - 97 5.3e-29 KIX domain
KIX_2 PF16987 131 - 202 2.3e-24 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 648
AcsI RAATTY 1 cut(s) 576
AcyI GRCGYC 2 cut(s) 387, 643
AfaI GTAC 2 cut(s) 80, 407
AfiI CCNNNNNNNGG 4 cut(s) 69, 152, 396, 479
AgsI TTSAA 3 cut(s) 133, 382, 460
AjnI CCWGG 3 cut(s) 309, 483, 605
AoxI GGCC 5 cut(s) 29, 154, 276, 356, 481
ApeKI GCWGC 6 cut(s) 188, 215, 218, 287, 368, 515
ApoI RAATTY 1 cut(s) 576
BbvI GCAGC 6 cut(s) 175, 202, 205, 299, 355, 502
BceAI ACGGC 2 cut(s) 332, 656
BciT130I CCWGG 3 cut(s) 311, 485, 607
BclI TGATCA 2 cut(s) 22, 349
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 6 cut(s) 189, 216, 219, 288, 369, 516
BlsI GCNGC 6 cut(s) 190, 217, 220, 289, 370, 517
Bme1390I CCNGG 3 cut(s) 311, 485, 607
BmrFI CCNGG 3 cut(s) 311, 485, 607
BpmI CTGGAG 2 cut(s) 63, 506
BsaBI GATNNNNATC 1 cut(s) 593
BsaHI GRCGYC 2 cut(s) 387, 643
BsaJI CCNNGG 2 cut(s) 270, 606
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 152, 396, 479
Bse118I RCCGGY 2 cut(s) 62, 389
Bse1I ACTGG 2 cut(s) 229, 294
Bse8I GATNNNNATC 1 cut(s) 593
BseBI CCWGG 3 cut(s) 311, 485, 607
BseDI CCNNGG 2 cut(s) 270, 606
BseGI GGATG 2 cut(s) 10, 408
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 4 cut(s) 69, 152, 396, 479
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 229, 294
BseXI GCAGC 6 cut(s) 175, 202, 205, 299, 355, 502
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 5 cut(s) 31, 156, 278, 358, 483
BsiSI CCGG 3 cut(s) 63, 390, 556
BslFI GGGAC 2 cut(s) 282, 608
BslI CCNNNNNNNGG 4 cut(s) 69, 152, 396, 479
BsmFI GGGAC 2 cut(s) 282, 608
BsnI GGCC 5 cut(s) 31, 156, 278, 358, 483
Bsp143I GATC 2 cut(s) 22, 349
Bsp19I CCATGG 1 cut(s) 270
BspANI GGCC 5 cut(s) 31, 156, 278, 358, 483
BspCNI CTCAG 1 cut(s) 164
BspFNI CGCG 1 cut(s) 648
BspMAI CTGCAG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 62, 389
BsrI ACTGG 2 cut(s) 229, 294
BssAI RCCGGY 2 cut(s) 62, 389
BssECI CCNNGG 2 cut(s) 270, 606
BssMI GATC 2 cut(s) 22, 349
BssNI GRCGYC 2 cut(s) 387, 643
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 3 cut(s) 311, 485, 607
Bst4CI ACNGT 2 cut(s) 20, 347
Bst6I CTCTTC 2 cut(s) 128, 455
BstACI GRCGYC 2 cut(s) 387, 643
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 64, 391, 481
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 10, 408
BstFNI CGCG 1 cut(s) 648
BstKTI GATC 2 cut(s) 25, 352
BstMBI GATC 2 cut(s) 22, 349
BstMWI GCNNNNNNNGC 4 cut(s) 47, 284, 374, 515
BstNI CCWGG 3 cut(s) 311, 485, 607
BstSCI CCNGG 3 cut(s) 309, 483, 605
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 6 cut(s) 175, 202, 205, 299, 355, 502
BsuRI GGCC 5 cut(s) 31, 156, 278, 358, 483
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 2 cut(s) 10, 408
BtsIMutI CAGTG 2 cut(s) 25, 352
Cac8I GCNNGC 3 cut(s) 64, 391, 481
Cfr10I RCCGGY 2 cut(s) 62, 389
CseI GACGC 3 cut(s) 395, 632, 637
Csp6I GTAC 2 cut(s) 79, 406
CviAII CATG 6 cut(s) 170, 271, 323, 497, 519, 598
CviQI GTAC 2 cut(s) 79, 406
DdeI CTNAG 1 cut(s) 151
DpnI GATC 2 cut(s) 24, 351
DpnII GATC 2 cut(s) 22, 349
DraI TTTAAA 1 cut(s) 585
Eam1104I CTCTTC 2 cut(s) 128, 455
EarI CTCTTC 2 cut(s) 128, 455
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 3 cut(s) 31, 358, 483
EcoRII CCWGG 3 cut(s) 309, 483, 605
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 6 cut(s) 173, 274, 326, 500, 522, 601
FaqI GGGAC 2 cut(s) 282, 608
FatI CATG 6 cut(s) 169, 270, 322, 496, 518, 597
FbaI TGATCA 2 cut(s) 22, 349
Fnu4HI GCNGC 6 cut(s) 189, 216, 219, 288, 369, 516
FokI GGATG 2 cut(s) 17, 415
Fsp4HI GCNGC 6 cut(s) 189, 216, 219, 288, 369, 516
GluI GCNGC 6 cut(s) 189, 216, 219, 288, 369, 516
GsuI CTGGAG 2 cut(s) 63, 506
HaeIII GGCC 5 cut(s) 31, 156, 278, 358, 483
HapII CCGG 3 cut(s) 63, 390, 556
HgaI GACGC 3 cut(s) 395, 632, 637
Hin1I GRCGYC 2 cut(s) 387, 643
Hin1II CATG 6 cut(s) 173, 274, 326, 500, 522, 601
HincII GTYRAC 2 cut(s) 112, 439
HindII GTYRAC 2 cut(s) 112, 439
HinfI GANTC 2 cut(s) 602, 612
HpaII CCGG 3 cut(s) 63, 390, 556
Hpy166II GTNNAC 3 cut(s) 112, 439, 662
Hpy188I TCNGA 4 cut(s) 27, 235, 354, 617
Hpy8I GTNNAC 3 cut(s) 112, 439, 662
Hpy99I CGWCG 2 cut(s) 249, 648
HpyAV CCTTC 3 cut(s) 42, 157, 484
HpyCH4III ACNGT 2 cut(s) 20, 347
HpyCH4IV ACGT 3 cut(s) 128, 247, 455
HpyCH4V TGCA 8 cut(s) 95, 191, 221, 371, 422, 509, 518, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 284, 374, 515
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 3 cut(s) 128, 247, 455
Hsp92I GRCGYC 2 cut(s) 387, 643
Hsp92II CATG 6 cut(s) 173, 274, 326, 500, 522, 601
KroI GCCGGC 2 cut(s) 62, 389
KroNI GCCGGC 2 cut(s) 64, 391
Ksp22I TGATCA 2 cut(s) 22, 349
Kzo9I GATC 2 cut(s) 22, 349
Lsp1109I GCAGC 6 cut(s) 175, 202, 205, 299, 355, 502
MaeII ACGT 3 cut(s) 128, 247, 455
MaeIII GTNAC 2 cut(s) 165, 492
MalI GATC 2 cut(s) 24, 351
MboI GATC 2 cut(s) 22, 349
MboII GAAGA 2 cut(s) 145, 472
MfeI CAATTG 1 cut(s) 510
MluCI AATT 6 cut(s) 105, 120, 183, 432, 510, 576
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 3 cut(s) 213, 330, 654
Mph1103I ATGCAT 1 cut(s) 550
MreI CGCCGGCG 1 cut(s) 389
MroNI GCCGGC 2 cut(s) 62, 389
MseI TTAA 4 cut(s) 83, 258, 410, 584
MspI CCGG 3 cut(s) 63, 390, 556
MspR9I CCNGG 3 cut(s) 311, 485, 607
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 3 cut(s) 311, 485, 607
MvnI CGCG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 47, 284, 374, 515
NaeI GCCGGC 2 cut(s) 64, 391
NcoI CCATGG 1 cut(s) 270
NdeII GATC 2 cut(s) 22, 349
NgoMIV GCCGGC 2 cut(s) 62, 389
NlaIII CATG 6 cut(s) 173, 274, 326, 500, 522, 601
NsiI ATGCAT 1 cut(s) 550
PceI AGGCCT 3 cut(s) 31, 358, 483
PdiI GCCGGC 2 cut(s) 64, 391
PfeI GAWTC 1 cut(s) 612
PkrI GCNGC 6 cut(s) 190, 217, 220, 289, 370, 517
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp6I CCWGG 3 cut(s) 309, 483, 605
PspGI CCWGG 3 cut(s) 309, 483, 605
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 2 cut(s) 80, 407
RsaNI GTAC 2 cut(s) 79, 406
SaqAI TTAA 4 cut(s) 83, 258, 410, 584
SatI GCNGC 6 cut(s) 189, 216, 219, 288, 369, 516
Sau3AI GATC 2 cut(s) 22, 349
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 311, 485, 607
SetI ASST 6 cut(s) 131, 197, 210, 250, 458, 636
SfcI CTRYAG 1 cut(s) 369
SgrAI CRCCGGYG 1 cut(s) 389
Sse9I AATT 6 cut(s) 105, 120, 183, 432, 510, 576
SseBI AGGCCT 3 cut(s) 31, 358, 483
StuI AGGCCT 3 cut(s) 31, 358, 483
StyD4I CCNGG 3 cut(s) 309, 483, 605
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 20, 347
TaiI ACGT 3 cut(s) 131, 250, 458
TaqI TCGA 1 cut(s) 53
TasI AATT 6 cut(s) 105, 120, 183, 432, 510, 576
TatI WGTACW 2 cut(s) 78, 405
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 4 cut(s) 83, 258, 410, 584
Tru9I TTAA 4 cut(s) 83, 258, 410, 584
TscAI CASTG 2 cut(s) 25, 352
TseI GCWGC 6 cut(s) 188, 215, 218, 287, 368, 515
TspDTI ATGAA 2 cut(s) 186, 513
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 25, 352
XapI RAATTY 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.