Rroxscaffold_5G00340930

dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000315
Physical Location & Seq
Forward (+)
9415060 .. 9416272
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340930.1

Sequence Viewer

Length: 567 bp
ATGGATATAAACAGTGGGAGTCCTCCTCAAGGTGGAGAGCCTGCAATGGATGTAGGAGATTGGAGGTGCCAATTGCAGGTGGATTCGCTGCAAAGAATTGTCATTAAGATAATGGATACATTGAAGAGGCATATTCCTTACTCTAGTGAAGATGAACTCAAGAAAATTCCTGTTAGGTTTGAGGAAAAGATTTATGTGGCTGCCACAAGTCGTGTACATATTCCGGTCTTACGGTATACAACTCCTATCGAGAACATTCGAATAACATTCCACCTGCCGGGTTTGCCTAATAAGCCACCGGAGTTGCCTATATTTCCATTGGTTCTGGGGAGGAAGCTCGTTGGTGGAAGCGACATTGGAGGGATAAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAACACAATATTACCTCCGAAATCGAGCTAATTAAAATGGACTACATTAACACAGCTATGGAGCGACTTGCCAAATCGATGTCGGTATCGGTTTGTGATCGATGTGGGGAACTCCTTGTCTCACTAGACTTGGCTTTCATGCCTCAGCTGCTACCTGCACATGCTTGA

Protein Analysis

188

Amino Acids

21.06

Weight (kDa)

5.96

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 71 3e-12 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 67, 282
Acc36I ACCTGC 3 cut(s) 67, 282, 562
AccB1I GGYRCC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 4 cut(s) 29, 32, 76, 277
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 4 cut(s) 337, 427, 455, 547
AluI AGCT 4 cut(s) 337, 427, 455, 547
Alw26I GTCTC 2 cut(s) 365, 523
ApeKI GCWGC 3 cut(s) 88, 200, 547
ApoI RAATTY 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 279
AsuII TTCGAA 1 cut(s) 259
BanI GGYRCC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 3 cut(s) 75, 187, 534
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 365, 523
BfaI CTAG 2 cut(s) 144, 524
BfuAI ACCTGC 3 cut(s) 67, 282, 562
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 3 cut(s) 89, 201, 548
BlsI GCNGC 3 cut(s) 90, 202, 549
Bme1390I CCNGG 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 10, 42
Bpu10I CCTNAGC 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 12, 143
BpuMI CCSGG 1 cut(s) 279
Bsa29I ATCGAT 2 cut(s) 476, 499
BsaWI WCCGGW 2 cut(s) 223, 298
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 32, 76, 277
Bse3DI GCAATG 1 cut(s) 51
BseCI ATCGAT 2 cut(s) 476, 499
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 4 cut(s) 29, 32, 76, 277
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 557
BseRI GAGGAG 1 cut(s) 15
BseXI GCAGC 3 cut(s) 75, 187, 534
BsgI GTGCAG 1 cut(s) 540
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 2 cut(s) 476, 499
BsiSI CCGG 3 cut(s) 224, 278, 299
BslI CCNNNNNNNGG 4 cut(s) 29, 32, 76, 277
BsmAI GTCTC 2 cut(s) 365, 523
BsmBI CGTCTC 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 1 cut(s) 496
BspCNI CTCAG 1 cut(s) 556
BspDI ATCGAT 2 cut(s) 476, 499
BspLI GGNNCC 1 cut(s) 68
BspMI ACCTGC 3 cut(s) 67, 282, 562
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 214
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 1 cut(s) 237
Bst1107I GTATAC 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 14, 234
Bst6I CTCTTC 1 cut(s) 119
BstAPI GCANNNNNTGC 1 cut(s) 382
BstAUI TGTACA 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 2 cut(s) 365, 523
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 4 cut(s) 283, 292, 382, 547
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 75, 187, 534
BstZ17I GTATAC 1 cut(s) 237
Bsu15I ATCGAT 2 cut(s) 476, 499
BsuI GTATCC 1 cut(s) 109
BsuTUI ATCGAT 2 cut(s) 476, 499
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 3 cut(s) 67, 282, 562
Cac8I GCNNGC 1 cut(s) 42
ClaI ATCGAT 2 cut(s) 476, 499
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviAII CATG 2 cut(s) 538, 560
CviJI RGCY 8 cut(s) 40, 200, 295, 337, 427, 455, 533, 547
CviKI_1 RGCY 8 cut(s) 40, 200, 295, 337, 427, 455, 533, 547
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 543
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 2 cut(s) 541, 563
FaiI YATR 9 cut(s) 8, 132, 195, 219, 237, 311, 458, 539, 561
FatI CATG 2 cut(s) 537, 559
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 89, 201, 548
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 89, 201, 548
FspBI CTAG 2 cut(s) 144, 524
GluI GCNGC 3 cut(s) 89, 201, 548
HapII CCGG 3 cut(s) 224, 278, 299
HgaI GACGC 1 cut(s) 382
Hin1II CATG 2 cut(s) 541, 563
HinfI GANTC 2 cut(s) 19, 83
HpaII CCGG 3 cut(s) 224, 278, 299
Hpy166II GTNNAC 2 cut(s) 215, 237
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 2 cut(s) 160, 250
Hpy8I GTNNAC 2 cut(s) 215, 237
HpyCH4III ACNGT 2 cut(s) 14, 234
HpyCH4V TGCA 4 cut(s) 44, 76, 91, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 283, 292, 382, 547
HpyF3I CTNAG 1 cut(s) 543
Hsp92II CATG 2 cut(s) 541, 563
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 9 cut(s) 54, 62, 183, 237, 287, 291, 311, 312, 362
Lsp1109I GCAGC 3 cut(s) 75, 187, 534
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 144, 524
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 2 cut(s) 136, 161
MfeI CAATTG 1 cut(s) 71
MluCI AATT 4 cut(s) 71, 96, 165, 429
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 9 cut(s) 33, 36, 57, 120, 175, 324, 353, 424, 552
MseI TTAA 3 cut(s) 105, 432, 447
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 3 cut(s) 224, 278, 299
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 283, 292, 382, 547
NciI CCSGG 1 cut(s) 279
NdeII GATC 1 cut(s) 496
NlaIII CATG 2 cut(s) 541, 563
NlaIV GGNNCC 1 cut(s) 68
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 1 cut(s) 259
PaqCI CACCTGC 2 cut(s) 67, 282
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 90, 202, 549
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 3 cut(s) 105, 432, 447
SatI GCNGC 3 cut(s) 89, 201, 548
Sau3AI GATC 1 cut(s) 496
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 279
SfaNI GCATC 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 27, 158
SmoI CTYRAG 2 cut(s) 27, 158
Sse9I AATT 4 cut(s) 71, 96, 165, 429
SspI AATATT 1 cut(s) 409
SspMI CTAG 2 cut(s) 144, 524
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 14, 234
TaqI TCGA 5 cut(s) 249, 259, 423, 476, 499
TasI AATT 4 cut(s) 71, 96, 165, 429
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 105, 432, 447
Tru9I TTAA 3 cut(s) 105, 432, 447
TscAI CASTG 1 cut(s) 19
TseI GCWGC 3 cut(s) 88, 200, 547
TspDTI ATGAA 2 cut(s) 168, 526
TspRI CASTG 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 165
XceI RCATGY 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 2 cut(s) 144, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.