Rmu_sc0002101.1_g000001

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002101.1
OG0000315
Physical Location & Seq
Reverse (-)
2 .. 1383
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002101.1_g000001.1.cds

Sequence Viewer

Length: 539 bp
ctgatcactgatttaaaacccttctcccatcttcacaatccctcaaaagagaaaggtttaatggataacaacaatggaattcctcctcaagatggacggccctcaatggaagcaggagattggaggagcagaatgcccacggatatgcggcaaagacttatcaacaggataatgtctacattgaaggcgcatcgccccatttctcgtcaagagggattagatgaactcgaggaaaatgctgtaagtttggaggaaaagatttatgctgctgccactagccagttggactatctctggaaaatttctcaggagatgctcacagttgtgaccaagccacagaatacaacatccaatcctcaagaatccaatggcaagggacctctcgattcagttgctgatcaaggacaatcaatctcaatgtcattgccagccaatcagtcccaaacaaggcaacatttcgtaccacagaacatacagaataacattctgcctgctggagttcaaagttatactgggttgtcatctggactttctcctac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

180

Amino Acids

19.94

Weight (kDa)

6.1

Isoelectric Point (pI)

64.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 176
AciI CCGC 1 cut(s) 148
AcsI RAATTY 2 cut(s) 78, 300
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 2 cut(s) 92, 447
AgsI TTSAA 2 cut(s) 184, 503
AleI CACNNNNGTG 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 266, 269
ApoI RAATTY 2 cut(s) 78, 300
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 99, 377
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 377
BbvI GCAGC 2 cut(s) 253, 256
BccI CCATC 2 cut(s) 36, 86
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 4 cut(s) 218, 252, 374, 408
BclI TGATCA 2 cut(s) 3, 397
BfaI CTAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 149, 267, 270
BlsI GCNGC 3 cut(s) 150, 268, 271
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 99, 377
BmiI GGNNCC 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 199, 303
BmuI ACTGGG 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 72, 342
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 447
Bse1I ACTGG 2 cut(s) 280, 517
Bse3DI GCAATG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 92, 447
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 280, 517
BseRI GAGGAG 2 cut(s) 75, 139
BseXI GCAGC 2 cut(s) 253, 256
BshFI GGCC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 227
BslFI GGGAC 2 cut(s) 390, 424
BslI CCNNNNNNNGG 2 cut(s) 92, 447
BsmFI GGGAC 2 cut(s) 390, 424
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 2 cut(s) 3, 397
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 422
BsrI ACTGG 2 cut(s) 280, 517
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 3, 397
Bst4CI ACNGT 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 429, 492
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 347
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 6, 400
BstMBI GATC 2 cut(s) 3, 397
BstV1I GCAGC 2 cut(s) 253, 256
BsuRI GGCC 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 176
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 2 cut(s) 429, 492
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 99, 377
Csp6I GTAC 1 cut(s) 461
CviJI RGCY 4 cut(s) 100, 279, 334, 431
CviKI_1 RGCY 4 cut(s) 100, 279, 334, 431
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 5, 399
DpnII GATC 2 cut(s) 3, 397
DraI TTTAAA 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 78
FaiI YATR 4 cut(s) 146, 264, 473, 510
FaqI GGGAC 2 cut(s) 390, 424
FbaI TGATCA 2 cut(s) 3, 397
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 3 cut(s) 149, 267, 270
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 149, 267, 270
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 189
GluI GCNGC 3 cut(s) 149, 267, 270
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 100
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 362, 386
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 7 cut(s) 89, 209, 295, 308, 359, 383, 525
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 31, 178
HpyCH4III ACNGT 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 306
HspAI GCGC 1 cut(s) 188
Ksp22I TGATCA 2 cut(s) 3, 397
Kzo9I GATC 2 cut(s) 3, 397
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 2 cut(s) 253, 256
LweI GCATC 2 cut(s) 199, 303
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 5, 399
MboI GATC 2 cut(s) 3, 397
MboII GAAGA 1 cut(s) 23
MluCI AATT 2 cut(s) 78, 300
MmeI TCCRAC 1 cut(s) 264
MseI TTAA 2 cut(s) 14, 59
MslI CAYNNNNRTG 2 cut(s) 143, 323
Mva1269I GAATGC 1 cut(s) 138
NdeII GATC 2 cut(s) 3, 397
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 325
OliI CACNNNNGTG 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 227
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 362, 386
PkrI GCNGC 3 cut(s) 150, 268, 271
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 99, 377
PspPPI RGGWCCY 1 cut(s) 377
PspXI VCTCGAGB 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 2 cut(s) 143, 323
SaqAI TTAA 2 cut(s) 14, 59
SatI GCNGC 3 cut(s) 149, 267, 270
Sau3AI GATC 2 cut(s) 3, 397
Sau96I GGNCC 2 cut(s) 99, 377
SetI ASST 2 cut(s) 58, 382
SfaNI GCATC 2 cut(s) 199, 303
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 143, 323
SmlI CTYRAG 3 cut(s) 87, 227, 357
SmoI CTYRAG 3 cut(s) 87, 227, 357
Sse9I AATT 2 cut(s) 78, 300
SsiI CCGC 1 cut(s) 148
SspMI CTAG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 228, 384
TasI AATT 2 cut(s) 78, 300
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 2 cut(s) 362, 386
Tru1I TTAA 2 cut(s) 14, 59
Tru9I TTAA 2 cut(s) 14, 59
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 266, 269
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 2 cut(s) 78, 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.