Rmu_sc0019599.1_g000001

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019599.1
OG0000315
Physical Location & Seq
Reverse (-)
1 .. 343
343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019599.1_g000001.1.cds

Sequence Viewer

Length: 234 bp
atggtaaggttcatggataaaaacgatgggagtcctcctaatggtggagagcctgcaatggatgcaggagattggaggaacagactgcaggcggattcgcggcaaagaattgtcaataagataatggatacattgaagaggcatcttcccttctccggtcaagagcgattgcatgaactcaagaaaattgctgttaggttcgaggaaaagatttatactgctgccacaagtcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

78

Amino Acids

9.0

Weight (kDa)

9.59

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 100
AciI CCGC 2 cut(s) 92, 100
AfiI CCNNNNNNNGG 3 cut(s) 41, 44, 155
AgsI TTSAA 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 20
BciVI GTATCC 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 2 cut(s) 101, 222
BlsI GCNGC 2 cut(s) 102, 223
BmsI GCATC 2 cut(s) 52, 151
BpuEI CTTGAG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 44, 155
Bse3DI GCAATG 1 cut(s) 63
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 3 cut(s) 41, 44, 155
BseMI GCAATG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 41, 44, 155
BspACI CCGC 2 cut(s) 92, 100
BspFNI CGCG 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 54, 90
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 86
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 208
BsuI GTATCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 54, 90
CviAII CATG 2 cut(s) 13, 173
CviJI RGCY 1 cut(s) 52
CviKI_1 RGCY 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 107
FaeI CATG 2 cut(s) 16, 176
FaiI YATR 3 cut(s) 14, 174, 216
FatI CATG 2 cut(s) 12, 172
Fnu4HI GCNGC 2 cut(s) 101, 222
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 101, 222
GluI GCNGC 2 cut(s) 101, 222
HapII CCGG 1 cut(s) 156
Hin1II CATG 2 cut(s) 16, 176
HinfI GANTC 2 cut(s) 31, 95
HpaII CCGG 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 161, 181
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 56, 65, 88, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 16, 176
LpnPI CCDG 4 cut(s) 51, 66, 74, 169
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 52, 151
MboII GAAGA 2 cut(s) 137, 148
MluCI AATT 2 cut(s) 108, 186
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 4 cut(s) 45, 69, 132, 196
MspI CCGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 16, 176
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 102, 223
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 90
SatI GCNGC 2 cut(s) 101, 222
SchI GAGTC 1 cut(s) 40
SetI ASST 2 cut(s) 11, 200
SfaNI GCATC 2 cut(s) 52, 151
SfcI CTRYAG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 108, 186
SsiI CCGC 2 cut(s) 92, 100
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 108, 186
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 95
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.