Rmu_sc0029317.1_g000001

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029317.1
OG0000315
Physical Location & Seq
Forward (+)
59 .. 1958
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029317.1_g000001.1.cds

Sequence Viewer

Length: 855 bp
atgcctgccagcttatcatctgcgttaccttctccacaggacgtgaacatttctagttcatcatttgaactatttcctatctgcggtctagttccctcgaagaaggatgcagtccagtcagattggaaggctcatagcaagatttgcggggctagtgagtatagatgtgactgtggcacactcttttccaggaatgatagcttcataactcatagagctttctgtgatgcattggccgctgaagaaagtgcaaggtttggttcaacttcaacagccaccaacattaatattccgagcttcatgtcggactcatcttccgctttacctcctgccttcagtctagacttattgactaattatcataggcaaatgcaaggacagcaacaggtagttcctcaacagcaacagcagcaatcaaagtattcacagcagcggatttctcagcaacagatacaacaagaacttatccgaaatatccaacagcaacaagagcagcagcagatgctattacaaaaaacaccattgtcatcttctcagcaatctcatgtacaatcagcatctgctgcagtggaatcttttctctgtaggcttcagcagaatcaacaattagctatttcccagttgacacaacccatgcttcagcaaacagcaatgccacaacagcaaatattgccgccacagcatcaacagcaacagttaacagcatctctggattccacggcccagattcaagataaaaatggagctgattggcaagaggaggtctatcaaaagataaaagtcatgaaggagacatacctaaccacactaagagagatataccagaaaaatgttactaaacttcagcaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

284

Amino Acids

31.96

Weight (kDa)

6.51

Isoelectric Point (pI)

79.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AciI CCGC 6 cut(s) 84, 147, 237, 318, 433, 674
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 5 cut(s) 261, 319, 575, 623, 827
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 4 cut(s) 68, 264, 270, 731
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 6 cut(s) 12, 201, 218, 297, 611, 746
AluI AGCT 6 cut(s) 12, 201, 218, 297, 611, 746
Alw26I GTCTC 1 cut(s) 785
AlwNI CAGNNNCTG 1 cut(s) 560
AoxI GGCC 2 cut(s) 234, 720
ApeKI GCWGC 5 cut(s) 409, 430, 493, 496, 563
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 2 cut(s) 72, 576
AspS9I GGNCC 1 cut(s) 721
BarI GAAGNNNNNNTAC 2 cut(s) 779, 811
BbvI GCAGC 5 cut(s) 421, 442, 505, 508, 550
BceAI ACGGC 1 cut(s) 735
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 4 cut(s) 54, 89, 153, 341
BfmI CTRYAG 2 cut(s) 564, 583
BfuAI ACCTGC 1 cut(s) 838
BisI GCNGC 7 cut(s) 237, 410, 431, 494, 497, 564, 674
BlsI GCNGC 7 cut(s) 238, 411, 432, 495, 498, 565, 675
Bme1390I CCNGG 1 cut(s) 190
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 721
BmrFI CCNGG 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 6 cut(s) 97, 217, 492, 566, 691, 713
BmuI ACTGGG 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 717
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 115, 619
Bse3DI GCAATG 1 cut(s) 657
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 2 cut(s) 455, 548
BseNI ACTGG 2 cut(s) 115, 619
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 5 cut(s) 421, 442, 505, 508, 550
BshFI GGCC 2 cut(s) 236, 722
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 785
BsnI GGCC 2 cut(s) 236, 722
Bsp1407I TGTACA 1 cut(s) 547
BspACI CCGC 6 cut(s) 84, 147, 237, 318, 433, 674
BspANI GGCC 2 cut(s) 236, 722
BspCNI CTCAG 2 cut(s) 454, 547
BspHI TCATGA 1 cut(s) 783
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 1 cut(s) 838
BsrDI GCAATG 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 547
BsrI ACTGG 2 cut(s) 115, 619
BssECI CCNNGG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 173, 696
BstAPI GCANNNNNTGC 4 cut(s) 144, 502, 563, 670
BstAUI TGTACA 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 6, 10
BstDEI CTNAG 3 cut(s) 441, 534, 809
BstDSI CCRYGG 1 cut(s) 717
BstF5I GGATG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 785
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 2 cut(s) 564, 583
BstV1I GCAGC 5 cut(s) 421, 442, 505, 508, 550
BsuRI GGCC 2 cut(s) 236, 722
BtgI CCRYGG 1 cut(s) 717
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 2 cut(s) 6, 10
CaiI CAGNNNCTG 1 cut(s) 560
CciI TCATGA 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 721
Csp6I GTAC 1 cut(s) 548
CviAII CATG 4 cut(s) 301, 545, 634, 784
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 3 cut(s) 441, 534, 809
EaeI YGGCCR 1 cut(s) 234
Eco57I CTGAAG 5 cut(s) 261, 319, 575, 623, 827
EcoRII CCWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 4 cut(s) 304, 548, 637, 787
FatI CATG 4 cut(s) 300, 544, 633, 783
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 7 cut(s) 237, 410, 431, 494, 497, 564, 674
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 7 cut(s) 237, 410, 431, 494, 497, 564, 674
FspBI CTAG 4 cut(s) 54, 89, 153, 341
GluI GCNGC 7 cut(s) 237, 410, 431, 494, 497, 564, 674
HaeIII GGCC 2 cut(s) 236, 722
Hin1II CATG 4 cut(s) 304, 548, 637, 787
HincII GTYRAC 2 cut(s) 624, 699
HindII GTYRAC 2 cut(s) 624, 699
HinfI GANTC 5 cut(s) 308, 572, 598, 713, 727
HpaI GTTAAC 1 cut(s) 699
Hpy166II GTNNAC 3 cut(s) 46, 624, 699
Hpy188I TCNGA 4 cut(s) 121, 294, 307, 470
Hpy188III TCNNGA 4 cut(s) 341, 710, 731, 784
Hpy8I GTNNAC 3 cut(s) 46, 624, 699
HpyAV CCTTC 5 cut(s) 39, 97, 121, 343, 781
HpyCH4III ACNGT 2 cut(s) 173, 696
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 5 cut(s) 110, 230, 251, 373, 566
HpyF3I CTNAG 3 cut(s) 441, 534, 809
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 4 cut(s) 304, 548, 637, 787
KspAI GTTAAC 1 cut(s) 699
LmnI GCTCC 1 cut(s) 743
Lsp1109I GCAGC 5 cut(s) 421, 442, 505, 508, 550
LweI GCATC 6 cut(s) 97, 217, 492, 566, 691, 713
MaeI CTAG 4 cut(s) 54, 89, 153, 341
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 24, 167, 832
MboII GAAGA 4 cut(s) 112, 254, 306, 522
MluCI AATT 2 cut(s) 355, 605
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 285, 502
MnlI CCTC 5 cut(s) 106, 336, 405, 751, 754
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 2 cut(s) 72, 576
MseI TTAA 2 cut(s) 285, 698
MspA1I CMGCKG 2 cut(s) 239, 433
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
NlaIII CATG 4 cut(s) 304, 548, 637, 787
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 232
PagI TCATGA 1 cut(s) 783
PdmI GAANNNNTTC 2 cut(s) 72, 576
PfeI GAWTC 4 cut(s) 572, 598, 713, 727
PfoI TCCNGGA 1 cut(s) 188
PkrI GCNGC 7 cut(s) 238, 411, 432, 495, 498, 565, 675
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspPI GGNCC 1 cut(s) 721
PstI CTGCAG 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 560
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SaqAI TTAA 2 cut(s) 285, 698
SatI GCNGC 7 cut(s) 237, 410, 431, 494, 497, 564, 674
Sau96I GGNCC 1 cut(s) 721
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 190
SfaNI GCATC 6 cut(s) 97, 217, 492, 566, 691, 713
SfcI CTRYAG 2 cut(s) 564, 583
Sse9I AATT 2 cut(s) 355, 605
SsiI CCGC 6 cut(s) 84, 147, 237, 318, 433, 674
SspI AATATT 2 cut(s) 289, 669
SspMI CTAG 4 cut(s) 54, 89, 153, 341
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 173, 696
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 355, 605
TatI WGTACW 1 cut(s) 547
TauI GCSGC 2 cut(s) 239, 676
TfiI GAWTC 4 cut(s) 572, 598, 713, 727
Tru1I TTAA 2 cut(s) 285, 698
Tru9I TTAA 2 cut(s) 285, 698
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 5 cut(s) 409, 430, 493, 496, 563
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 4 cut(s) 48, 193, 289, 800
TspRI CASTG 1 cut(s) 573
VspI ATTAAT 1 cut(s) 285
XbaI TCTAGA 1 cut(s) 340
XmnI GAANNNNTTC 2 cut(s) 72, 576
XspI CTAG 4 cut(s) 54, 89, 153, 341
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.