Rmu_sc0002101.1_g000006

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002101.1
OG0000315
Physical Location & Seq
Reverse (-)
16513 .. 18979
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002101.1_g000006.1.cds

Sequence Viewer

Length: 1026 bp
ctgcatcctattcttgttttccatagttccactcaaagaaaacgtttgttgagagtgttaagtttgatggatgccaacgattggagcccttctcaaggaggagaacagtctatgtatgtaggtgattggaggagccaattgctgccagatttgcggcaagtgtttcttaataagataatggatacattgaagaggcatctgcctttctctggtccagagggattacttgaactccagaaaattgctgtaaggtttgaggaaaaggtttatactgctgccacaagtcagtcggattatgaacgaaaaatttctctgaagttgctcacaatggagaccaagtcgcagaacacaaggggcagctctatacaattcaactcagccagcaatagcaagagactccccgatcctgttttaatgaataccagtaacaatgggtggcctcctcaaggtggaggaccatctatggacacatcagattggagtcaattgccgtcagatgcacaacatggatggcaacagggagctccccaacagcaacggcagcaaacctcaaattctcagcagtactatatttactcgcagcagtatatgtaccagcaacagttacaacaacaactcctccttcaaagtcatattcaactgcaacaagagcagcagcagattccactacaaaaaactcagttgcaatcttctcagcaatcagcatctgttatgcaaccttcggtggagccattgcatctctctgtgcaaccttctgagcaattgccgccagatgcgcgacatagaattgtcaacaaaataactaatgtgctaaagaggaatccgtcctgtggtcaaatgggattaccagaactcgagagaatcgcagcaacacttgaggagaagatatctgccgttgcctcaagccaggcggattatctgcgtaaagtaagtctgaagatgctcaccatggagacgcaaatcacagctcccccatccaatgacagtttggaatcattatttgcttccctggatttgcaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

341

Amino Acids

38.61

Weight (kDa)

7.23

Isoelectric Point (pI)

70.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 81
AccII CGCG 1 cut(s) 778
AciI CCGC 3 cut(s) 154, 767, 911
AclI AACGTT 1 cut(s) 43
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 2 cut(s) 306, 553
AcuI CTGAAG 2 cut(s) 335, 956
AfaI GTAC 2 cut(s) 566, 593
AfiI CCNNNNNNNGG 6 cut(s) 81, 95, 209, 446, 449, 830
AgsI TTSAA 5 cut(s) 190, 230, 373, 626, 638
AjnI CCWGG 2 cut(s) 906, 1008
AluBI AGCT 3 cut(s) 360, 524, 968
AluI AGCT 3 cut(s) 360, 524, 968
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 3 cut(s) 326, 388, 947
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 707
Ama87I CYCGRG 1 cut(s) 854
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 8 cut(s) 142, 275, 357, 541, 580, 652, 655, 866
ApoI RAATTY 2 cut(s) 306, 553
Asp700I GAANNNNTTC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 2 cut(s) 212, 455
AsuHPI GGTGA 2 cut(s) 134, 937
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 2 cut(s) 212, 455
BanII GRGCYC 2 cut(s) 89, 526
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 8 cut(s) 129, 262, 369, 553, 592, 664, 667, 878
BccI CCATC 4 cut(s) 61, 466, 504, 982
BceAI ACGGC 3 cut(s) 475, 554, 878
BciT130I CCWGG 2 cut(s) 908, 1010
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 326, 388, 947
BfaI CTAG 1 cut(s) 1024
BfuI GTATCC 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 908, 1010
Bme18I GGWCC 2 cut(s) 212, 455
BmeT110I CYCGRG 1 cut(s) 854
BmgT120I GGNCC 2 cut(s) 212, 455
BmiI GGNNCC 3 cut(s) 86, 134, 729
BmrFI CCNGG 2 cut(s) 908, 1010
BmsI GCATC 8 cut(s) 13, 61, 205, 487, 713, 745, 763, 930
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 4 cut(s) 78, 429, 886, 896
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 948, 1008
BsaXI ACNNNNNCTCC 8 cut(s) 216, 246, 323, 353, 600, 603, 630, 633
Bsc4I CCNNNNNNNGG 6 cut(s) 81, 95, 209, 446, 449, 830
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 908, 1010
BseDI CCNNGG 2 cut(s) 948, 1008
BseGI GGATG 4 cut(s) 4, 76, 515, 974
BseLI CCNNNNNNNGG 6 cut(s) 81, 95, 209, 446, 449, 830
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 5 cut(s) 390, 572, 692, 707, 747
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 5 cut(s) 114, 145, 432, 608, 893
BseXI GCAGC 8 cut(s) 129, 262, 369, 553, 592, 664, 667, 878
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 854
BslI CCNNNNNNNGG 6 cut(s) 81, 95, 209, 446, 449, 830
BsmAI GTCTC 3 cut(s) 326, 388, 947
BsmBI CGTCTC 1 cut(s) 947
BsnI GGCC 1 cut(s) 439
Bso31I GGTCTC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 854
Bsp1286I GDGCHC 2 cut(s) 89, 526
Bsp143I GATC 1 cut(s) 403
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 3 cut(s) 154, 767, 911
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 5 cut(s) 389, 571, 691, 706, 748
BspFNI CGCG 1 cut(s) 778
BspLI GGNNCC 3 cut(s) 86, 134, 729
BspPI GGATC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 948, 1008
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 948
Bst2UI CCWGG 2 cut(s) 908, 1010
Bst4CI ACNGT 3 cut(s) 108, 603, 986
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 5 cut(s) 376, 558, 678, 693, 756
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 2 cut(s) 93, 444
BstF5I GGATG 4 cut(s) 4, 76, 515, 974
BstFNI CGCG 1 cut(s) 778
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 3 cut(s) 326, 388, 947
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 5 cut(s) 151, 541, 649, 766, 775
BstNI CCWGG 2 cut(s) 908, 1010
BstSCI CCNGG 2 cut(s) 906, 1008
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 8 cut(s) 129, 262, 369, 553, 592, 664, 667, 878
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 948
BtsCI GGATG 4 cut(s) 4, 76, 515, 974
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 707
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 2 cut(s) 212, 455
CseI GACGC 1 cut(s) 964
Csp6I GTAC 2 cut(s) 565, 592
CviAII CATG 2 cut(s) 506, 949
CviJI RGCY 9 cut(s) 87, 135, 360, 380, 439, 524, 730, 906, 968
CviKI_1 RGCY 9 cut(s) 87, 135, 360, 380, 439, 524, 730, 906, 968
CviQI GTAC 2 cut(s) 565, 592
DdeI CTNAG 5 cut(s) 376, 558, 678, 693, 756
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 926
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 948
Eco24I GRGCYC 2 cut(s) 89, 526
Eco31I GGTCTC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 888
Eco47I GGWCC 2 cut(s) 212, 455
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 2 cut(s) 335, 956
Eco88I CYCGRG 1 cut(s) 854
EcoICRI GAGCTC 1 cut(s) 524
EcoNI CCTNNNNNAGG 2 cut(s) 93, 444
EcoRII CCWGG 2 cut(s) 906, 1008
EcoRV GATATC 1 cut(s) 888
EcoT14I CCWWGG 1 cut(s) 948
EcoT38I GRGCYC 2 cut(s) 89, 526
ErhI CCWWGG 1 cut(s) 948
Esp3I CGTCTC 1 cut(s) 947
FaeI CATG 2 cut(s) 509, 952
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 2 cut(s) 505, 948
FokI GGATG 3 cut(s) 83, 522, 961
FriOI GRGCYC 2 cut(s) 89, 526
FspBI CTAG 1 cut(s) 1024
GlaI GCGC 1 cut(s) 777
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 1 cut(s) 439
HgaI GACGC 1 cut(s) 964
HhaI GCGC 1 cut(s) 778
Hin1II CATG 2 cut(s) 509, 952
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 6 cut(s) 396, 481, 661, 820, 861, 992
HphI GGTGA 2 cut(s) 134, 937
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 6 cut(s) 292, 315, 475, 496, 757, 936
Hpy188III TCNNGA 3 cut(s) 215, 235, 856
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 4 cut(s) 99, 632, 729, 762
HpyCH4III ACNGT 3 cut(s) 108, 603, 986
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 8 cut(s) 4, 500, 643, 685, 715, 736, 748, 1018
HpyF10VI GCNNNNNNNGC 5 cut(s) 151, 541, 649, 766, 775
HpyF3I CTNAG 5 cut(s) 376, 558, 678, 693, 756
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 2 cut(s) 509, 952
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 6 cut(s) 84, 132, 521, 529, 727, 973
Lsp1109I GCAGC 8 cut(s) 129, 262, 369, 553, 592, 664, 667, 878
LweI GCATC 8 cut(s) 13, 61, 205, 487, 713, 745, 763, 930
MaeI CTAG 1 cut(s) 1024
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 425, 603
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 4 cut(s) 202, 681, 895, 949
MfeI CAATTG 3 cut(s) 137, 485, 761
MhlI GDGCHC 2 cut(s) 89, 526
MluCI AATT 8 cut(s) 137, 240, 306, 368, 485, 553, 761, 786
MlyI GAGTC 2 cut(s) 390, 490
MmeI TCCRAC 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 307
MseI TTAA 3 cut(s) 59, 168, 413
MspR9I CCNGG 2 cut(s) 908, 1010
MunI CAATTG 3 cut(s) 137, 485, 761
MvaI CCWGG 2 cut(s) 908, 1010
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 5 cut(s) 151, 541, 649, 766, 775
NcoI CCATGG 1 cut(s) 948
NdeII GATC 1 cut(s) 403
NlaIII CATG 2 cut(s) 509, 952
NlaIV GGNNCC 3 cut(s) 86, 134, 729
PaeR7I CTCGAG 1 cut(s) 854
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 4 cut(s) 661, 820, 861, 992
PflFI GACNNNGTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 81
PleI GAGTC 2 cut(s) 390, 489
PpsI GAGTC 2 cut(s) 390, 489
Psp124BI GAGCTC 1 cut(s) 526
Psp1406I AACGTT 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 906, 1008
PspGI CCWGG 2 cut(s) 906, 1008
PspN4I GGNNCC 3 cut(s) 86, 134, 729
PspPI GGNCC 2 cut(s) 212, 455
PstNI CAGNNNCTG 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 2 cut(s) 566, 593
RsaNI GTAC 2 cut(s) 565, 592
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 3 cut(s) 59, 168, 413
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 212, 455
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 390, 490
ScrFI CCNGG 2 cut(s) 908, 1010
SduI GDGCHC 2 cut(s) 89, 526
SfaNI GCATC 8 cut(s) 13, 61, 205, 487, 713, 745, 763, 930
Sfr274I CTCGAG 1 cut(s) 854
SinI GGWCC 2 cut(s) 212, 455
SlaI CTCGAG 1 cut(s) 854
SmlI CTYRAG 5 cut(s) 93, 444, 854, 875, 901
SmoI CTYRAG 5 cut(s) 93, 444, 854, 875, 901
Sse9I AATT 8 cut(s) 137, 240, 306, 368, 485, 553, 761, 786
SsiI CCGC 3 cut(s) 154, 767, 911
SspMI CTAG 1 cut(s) 1024
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 906, 1008
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 3 cut(s) 108, 603, 986
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 855
TasI AATT 8 cut(s) 137, 240, 306, 368, 485, 553, 761, 786
TatI WGTACW 1 cut(s) 564
TauI GCSGC 2 cut(s) 157, 769
TfiI GAWTC 4 cut(s) 661, 820, 861, 992
Tru1I TTAA 3 cut(s) 59, 168, 413
Tru9I TTAA 3 cut(s) 59, 168, 413
TseI GCWGC 8 cut(s) 142, 275, 357, 541, 580, 652, 655, 866
TspDTI ATGAA 2 cut(s) 312, 431
TspGWI ACGGA 1 cut(s) 813
Tth111I GACNNNGTC 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 212, 455
XagI CCTNNNNNAGG 2 cut(s) 93, 444
XapI RAATTY 2 cut(s) 306, 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 985
XhoI CTCGAG 1 cut(s) 854
XmnI GAANNNNTTC 1 cut(s) 307
XspI CTAG 1 cut(s) 1024
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.