Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000315

Physical Location & Seq

Genomic Coordinates Forward (+)

7331168 .. 7333344

Gene Structure 2177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATAACTACGATGGGAATCCTTCTCTGGGTGGAGAGCCTGCGATGGACATAGGAGATTGGAGGTGCCAATTGCAGGCAGATTCGCGGGAAAGAATTGTCAATAAGATAATGGAGACATTGAAGAGGCATCTTCCTTTCTCTGGTCAAGAGGGGTTAGCTGAACTCAAGAAAATTGCTGTAAGGTTTGAGGGAAAGATTTATGCTGCTGCGACAAGTCAGTCGGATTATCTACGGACAATTTCTCTGAAGATGCTCACTATGGAGAGCAAGTCTCAGAATACAGTGACCAGTTCTTTACAATCCAACTCTGCTTGGTCTTCTGTTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAAAACATTCAAAGCAACATTCCGCATGCTGGAATTCAATTTTCTGCTGGTTTATCATCTGCACAAGCTCCTACCCCAGCTCTGAATATGTCTGCCTTACTATCTGCACTACCCCCTTCCCCTGGTACAGATATGCCTGCCAGCAACTCTGGATTCCACTGCCCAGATTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0014070 GO:0016592 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042304 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045723 GO:0045834 GO:0045923 GO:0045935 GO:0046677 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

181

Amino Acids

19.5

Weight (kDa)

5.88

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIX_2	PF16987	19 - 97	1.4e-33	KIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca	FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica	MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica	Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis	pycom03g02570 pycom03g02580
rosa_chinensis	RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata	RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora	Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa	Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha	Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana	Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	66
AccII	CGCG	1 cut(s)	88
AciI	CCGC	2 cut(s)	88, 389
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	5 cut(s)	29, 76, 143, 395, 488
AgsI	TTSAA	3 cut(s)	124, 377, 404
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	3 cut(s)	161, 434, 446
AluI	AGCT	3 cut(s)	161, 434, 446
Alw26I	GTCTC	2 cut(s)	110, 279
ApeKI	GCWGC	2 cut(s)	206, 209
ApoI	RAATTY	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	193, 196
BccI	CCATC	2 cut(s)	8, 40
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	110, 279
BisI	GCNGC	2 cut(s)	207, 210
BlsI	GCNGC	2 cut(s)	208, 211
Bme1390I	CCNGG	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	139, 243
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpuEI	CTTGAG	2 cut(s)	152, 321
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 76, 143, 395, 488
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	5 cut(s)	29, 76, 143, 395, 488
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	193, 196
BseYI	CCCAGC	1 cut(s)	442
BsgI	GTGCAG	2 cut(s)	411, 456
Bsh1236I	CGCG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	66
BslI	CCNNNNNNNGG	5 cut(s)	29, 76, 143, 395, 488
BsmAI	GTCTC	2 cut(s)	110, 279
BspACI	CCGC	2 cut(s)	88, 389
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	5 cut(s)	42, 78, 393, 504, 508
BstDEI	CTNAG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	110, 279
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	193, 196
BstV2I	GAAGAC	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	291, 523
Cac8I	GCNNGC	5 cut(s)	42, 78, 393, 504, 508
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	4 cut(s)	40, 161, 434, 446
CviKI_1	RGCY	4 cut(s)	40, 161, 434, 446
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	1 cut(s)	276
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	1 cut(s)	395
FaiI	YATR	7 cut(s)	53, 204, 263, 329, 393, 455, 500
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	207, 210
Fsp4HI	GCNGC	2 cut(s)	207, 210
GluI	GCNGC	2 cut(s)	207, 210
GsaI	CCCAGC	1 cut(s)	446
Hin1II	CATG	1 cut(s)	395
HinfI	GANTC	3 cut(s)	19, 83, 519
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	5 cut(s)	226, 249, 279, 367, 450
Hpy188III	TCNNGA	3 cut(s)	149, 169, 516
HpyAV	CCTTC	2 cut(s)	33, 492
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	76, 331, 428, 473
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	2 cut(s)	193, 196
LweI	GCATC	2 cut(s)	139, 243
MaeIII	GTNAC	2 cut(s)	286, 340
MboII	GAAGA	4 cut(s)	125, 136, 262, 312
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	6 cut(s)	71, 96, 174, 240, 399, 404
MmeI	TCCRAC	2 cut(s)	204, 330
MnlI	CCTC	5 cut(s)	57, 120, 145, 184, 345
MroXI	GAANNNNTTC	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	88
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	2 cut(s)	286, 340
NspI	RCATGY	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	19, 83, 519
PkrI	GCNGC	2 cut(s)	208, 211
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SatI	GCNGC	2 cut(s)	207, 210
ScrFI	CCNGG	1 cut(s)	489
SetI	ASST	6 cut(s)	68, 163, 188, 337, 436, 448
SfaNI	GCATC	2 cut(s)	139, 243
SmlI	CTYRAG	2 cut(s)	167, 336
SmoI	CTYRAG	2 cut(s)	167, 336
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	6 cut(s)	71, 96, 174, 240, 399, 404
SsiI	CCGC	2 cut(s)	88, 389
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	6 cut(s)	71, 96, 174, 240, 399, 404
TfiI	GAWTC	3 cut(s)	19, 83, 519
TscAI	CASTG	2 cut(s)	291, 530
TseFI	GTSAC	2 cut(s)	286, 340
TseI	GCWGC	2 cut(s)	206, 209
Tsp45I	GTSAC	2 cut(s)	286, 340
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	291, 530
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.