RLG00000029834

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000315
Physical Location & Seq
Reverse (-)
49994073 .. 49995261
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029834

Sequence Viewer

Length: 438 bp
ATGAAGCGTTTAAGTATACTAATGGATACATTGAAGAGGCATATTCCTTACTCCAGTGAGGATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATGTGGCTGCCACAAGTCAGATGCTCACTATGGACACCAAGTCTCAGAACACAATGGCGAATTCTTTACAATCCAACTATGCTGGGTCTTCTGGTATACAACTCCTATCAGAGGACATTCAGAATAACATTCCACCTGCTGGAATTCAAAGTTCTACTGGCTTACCATCTGTGCTACCCCATGACTCCGGGCCACAACAGCAAACATTGCCCCCACAGCATCAACAGCAACAATTTATAGGTACATTCAAAGCACATGTGCAACCTTGGGCAAGGGACTGTACGAGGGATTGGATTGGCTTTCCAACAACATTGCTAGCAAGGCAAGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

146

Amino Acids

16.25

Weight (kDa)

7.91

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 5 - 55 6.6e-10 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 2 cut(s) 16, 199
AcsI RAATTY 2 cut(s) 163, 246
AfaI GTAC 2 cut(s) 346, 385
AfiI CCNNNNNNNGG 2 cut(s) 214, 242
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 4 cut(s) 34, 251, 352, 434
AhdI GACNNNNNGTC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 163, 246
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 292
AsuNHI GCTAGC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 247
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 292
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 114, 331
BmtI GCTAGC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 242
Bse1I ACTGG 2 cut(s) 54, 265
Bse3DI GCAATG 2 cut(s) 308, 413
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 214, 242
BseMI GCAATG 2 cut(s) 308, 413
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 54, 265
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 214, 242
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 1 cut(s) 295
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 308, 413
BsrI ACTGG 2 cut(s) 54, 265
BssECI CCNNGG 1 cut(s) 368
BssNAI GTATAC 2 cut(s) 17, 200
BssT1I CCWWGG 1 cut(s) 368
Bst1107I GTATAC 2 cut(s) 17, 200
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 147
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 150
BstMWI GCNNNNNNNGC 5 cut(s) 301, 310, 319, 328, 424
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 183
BstZ17I GTATAC 2 cut(s) 17, 200
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 345, 384
CviAII CATG 2 cut(s) 284, 359
CviJI RGCY 4 cut(s) 110, 264, 295, 402
CviKI_1 RGCY 4 cut(s) 110, 264, 295, 402
CviQI GTAC 2 cut(s) 345, 384
DdeI CTNAG 1 cut(s) 147
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRI GAATTC 2 cut(s) 163, 246
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 287, 362
FaiI YATR 9 cut(s) 17, 42, 105, 134, 183, 200, 285, 341, 360
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 283, 358
FblI GTMKAC 2 cut(s) 16, 199
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 419
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 291
Hin1II CATG 2 cut(s) 287, 362
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 291
Hpy166II GTNNAC 2 cut(s) 17, 200
Hpy188I TCNGA 4 cut(s) 123, 150, 214, 225
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 17, 200
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 5 cut(s) 301, 310, 319, 328, 424
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 287, 362
LpnPI CCDG 7 cut(s) 67, 171, 180, 228, 246, 252, 304
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 114, 331
MaeI CTAG 1 cut(s) 419
MboII GAAGA 2 cut(s) 46, 183
MluCI AATT 4 cut(s) 75, 163, 246, 335
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 201, 431
MnlI CCTC 5 cut(s) 30, 52, 85, 208, 381
MseI TTAA 1 cut(s) 11
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 292
MwoI GCNNNNNNNGC 5 cut(s) 301, 310, 319, 328, 424
NciI CCSGG 1 cut(s) 292
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 2 cut(s) 287, 362
NspI RCATGY 1 cut(s) 362
PaqCI CACCTGC 1 cut(s) 247
PciI ACATGT 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PscI ACATGT 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 2 cut(s) 346, 385
RsaNI GTAC 2 cut(s) 345, 384
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 292
SetI ASST 4 cut(s) 89, 241, 346, 370
SfaNI GCATC 2 cut(s) 114, 331
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 4 cut(s) 75, 163, 246, 335
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 383
TasI AATT 4 cut(s) 75, 163, 246, 335
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 17, 78
TspRI CASTG 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 242
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 2 cut(s) 163, 246
XceI RCATGY 1 cut(s) 362
XmiI GTMKAC 2 cut(s) 16, 199
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.