RchiOBHm_Chr5g0075801

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000315
Physical Location & Seq
Forward (+)
81545180 .. 81547942
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35050

Sequence Viewer

Length: 960 bp
ATGGATGCCAACTATTGGAGCCCTTCTCAAGGAGGAGAACAGTTTATGTATGTAGGTGATTGGAGGAGCCAATTGCTGCCAGATTTGCGGCAAGTGTTTCTTAATAAGATAATGGATACATTGAAGAGGCATCTGCCTTTCTCTGGTCCAGAGGGATTACTTGAACTCCAGAAAATTGCTGTAAGGTTTGAGGAAAAGGTTTATACTGCTGCCACAAGTCAGTCGGATTATGAACGAAAAATTTCTCTGAAGATGCTCACAATGGAGACCAAGTCGCAGAACACAAGGGGCAGCTCTATACAATTCAACTCAGCCAGCAATAGCAAGAGACTCCCCGATCCTGTTTTAATGAATACCAGTAACAATGGGTGGCCTCCTCAAGGTGGAGGACCATCTATGGACACATCAGATTGGAGTCAATTGCCGTCAGATGCACAACATGGATGGCAACAGGGAGCTCCCCAACAGCAACGGCAGCAAACCTCAAATTCTCAGCAGTACTATATTTACTCGCAGCAGTATATGTACCAGCAACAGTTACAACAACAACTCCTCCTTCAAAGTCATATTCAACTGCAACAAGAGCAGCAGCAGATTCCACTACAAAAAACTCAGTTGCAATCTTCTCAGCAATCAGCATCTGTTATGCAACCTTCGGTGGAGCCATTGCATCTCTCTGTGCAACCTTCTGAGCAATTGCCGCCAGATGCACGACATAGCATTGTCAACAAAATAACTAATGTGTTAAAGAGGAATCCGTCCTGTGGTCAAATTGGATTACCAGAACTCGAGAGAATCGCAGCAACACTTGAGGAGAAGATATATGCTGTTGCCTCAAGCCAGGCGGATTATCTGCATAAAGTAAGTCTGAAGATGCTCACCATGGAGACGCAAATCACAGCTCCCCCATCCAATGACAGTTTGGAATCATTATTTGCTTCCCTGGATTTGCAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

319

Amino Acids

36.11

Weight (kDa)

5.72

Isoelectric Point (pI)

72.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 98 1.9e-31 KIX domain
KIX_2 PF16987 231 - 304 5.4e-21 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 15
AciI CCGC 3 cut(s) 88, 701, 845
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 240, 487
AcuI CTGAAG 2 cut(s) 269, 890
AfaI GTAC 2 cut(s) 500, 527
AfiI CCNNNNNNNGG 6 cut(s) 15, 29, 143, 380, 383, 764
AgsI TTSAA 5 cut(s) 124, 164, 307, 560, 572
AjnI CCWGG 2 cut(s) 840, 942
AluBI AGCT 3 cut(s) 294, 458, 902
AluI AGCT 3 cut(s) 294, 458, 902
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 3 cut(s) 260, 322, 881
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 8 cut(s) 76, 209, 291, 475, 514, 586, 589, 800
ApoI RAATTY 2 cut(s) 240, 487
Asp700I GAANNNNTTC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 146, 389
AsuHPI GGTGA 2 cut(s) 68, 871
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 2 cut(s) 146, 389
BanII GRGCYC 2 cut(s) 23, 460
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 8 cut(s) 63, 196, 303, 487, 526, 598, 601, 812
BccI CCATC 3 cut(s) 400, 438, 916
BceAI ACGGC 2 cut(s) 409, 488
BciT130I CCWGG 2 cut(s) 842, 944
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 3 cut(s) 260, 322, 881
BfaI CTAG 1 cut(s) 958
BfuI GTATCC 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 2 cut(s) 842, 944
Bme18I GGWCC 2 cut(s) 146, 389
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 2 cut(s) 146, 389
BmiI GGNNCC 3 cut(s) 20, 68, 663
BmrFI CCNGG 2 cut(s) 842, 944
BmsI GCATC 7 cut(s) 139, 243, 421, 647, 679, 697, 864
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 4 cut(s) 12, 363, 820, 830
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 882, 942
BsaXI ACNNNNNCTCC 8 cut(s) 150, 180, 257, 287, 534, 537, 564, 567
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 29, 143, 380, 383, 764
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 842, 944
BseDI CCNNGG 2 cut(s) 882, 942
BseGI GGATG 3 cut(s) 10, 449, 908
BseLI CCNNNNNNNGG 6 cut(s) 15, 29, 143, 380, 383, 764
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 5 cut(s) 324, 506, 626, 641, 681
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 5 cut(s) 48, 79, 366, 542, 827
BseXI GCAGC 8 cut(s) 63, 196, 303, 487, 526, 598, 601, 812
BshFI GGCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 788
BslI CCNNNNNNNGG 6 cut(s) 15, 29, 143, 380, 383, 764
BsmAI GTCTC 3 cut(s) 260, 322, 881
BsmBI CGTCTC 1 cut(s) 881
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 23, 460
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 3 cut(s) 88, 701, 845
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 5 cut(s) 323, 505, 625, 640, 682
BspLI GGNNCC 3 cut(s) 20, 68, 663
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 882, 942
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 882
Bst2UI CCWGG 2 cut(s) 842, 944
Bst4CI ACNGT 3 cut(s) 42, 537, 920
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 5 cut(s) 310, 492, 612, 627, 690
BstDSI CCRYGG 1 cut(s) 882
BstENI CCTNNNNNAGG 2 cut(s) 27, 378
BstF5I GGATG 3 cut(s) 10, 449, 908
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 3 cut(s) 260, 322, 881
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 85, 475, 583, 700
BstNI CCWGG 2 cut(s) 842, 944
BstSCI CCNGG 2 cut(s) 840, 942
BstV1I GCAGC 8 cut(s) 63, 196, 303, 487, 526, 598, 601, 812
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 882
BtsCI GGATG 3 cut(s) 10, 449, 908
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 146, 389
CseI GACGC 1 cut(s) 898
Csp6I GTAC 2 cut(s) 499, 526
CviAII CATG 2 cut(s) 440, 883
CviJI RGCY 9 cut(s) 21, 69, 294, 314, 373, 458, 664, 840, 902
CviKI_1 RGCY 9 cut(s) 21, 69, 294, 314, 373, 458, 664, 840, 902
CviQI GTAC 2 cut(s) 499, 526
DdeI CTNAG 5 cut(s) 310, 492, 612, 627, 690
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 860
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 882
Eco24I GRGCYC 2 cut(s) 23, 460
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 146, 389
Eco53kI GAGCTC 1 cut(s) 458
Eco57I CTGAAG 2 cut(s) 269, 890
Eco88I CYCGRG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 458
EcoNI CCTNNNNNAGG 2 cut(s) 27, 378
EcoRII CCWGG 2 cut(s) 840, 942
EcoT14I CCWWGG 1 cut(s) 882
EcoT38I GRGCYC 2 cut(s) 23, 460
ErhI CCWWGG 1 cut(s) 882
Esp3I CGTCTC 1 cut(s) 881
FaeI CATG 2 cut(s) 443, 886
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 2 cut(s) 439, 882
FokI GGATG 3 cut(s) 17, 456, 895
FriOI GRGCYC 2 cut(s) 23, 460
FspBI CTAG 1 cut(s) 958
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 373
HgaI GACGC 1 cut(s) 898
Hin1II CATG 2 cut(s) 443, 886
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 6 cut(s) 330, 415, 595, 754, 795, 926
HphI GGTGA 2 cut(s) 68, 871
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 6 cut(s) 226, 249, 409, 430, 691, 870
Hpy188III TCNNGA 3 cut(s) 149, 169, 790
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 4 cut(s) 33, 566, 663, 696
HpyCH4III ACNGT 3 cut(s) 42, 537, 920
HpyCH4V TGCA 9 cut(s) 434, 577, 619, 649, 670, 682, 710, 856, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 475, 583, 700
HpyF3I CTNAG 5 cut(s) 310, 492, 612, 627, 690
Hsp92II CATG 2 cut(s) 443, 886
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 6 cut(s) 18, 66, 455, 463, 661, 907
Lsp1109I GCAGC 8 cut(s) 63, 196, 303, 487, 526, 598, 601, 812
LweI GCATC 7 cut(s) 139, 243, 421, 647, 679, 697, 864
MaeI CTAG 1 cut(s) 958
MaeIII GTNAC 2 cut(s) 359, 537
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 5 cut(s) 136, 262, 615, 829, 883
MfeI CAATTG 3 cut(s) 71, 419, 695
MhlI GDGCHC 2 cut(s) 23, 460
MluCI AATT 8 cut(s) 71, 174, 240, 302, 419, 487, 695, 771
MlyI GAGTC 2 cut(s) 324, 424
MmeI TCCRAC 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 3 cut(s) 102, 347, 746
MspR9I CCNGG 2 cut(s) 842, 944
MunI CAATTG 3 cut(s) 71, 419, 695
MvaI CCWGG 2 cut(s) 842, 944
MwoI GCNNNNNNNGC 4 cut(s) 85, 475, 583, 700
NcoI CCATGG 1 cut(s) 882
NdeII GATC 1 cut(s) 337
NlaIII CATG 2 cut(s) 443, 886
NlaIV GGNNCC 3 cut(s) 20, 68, 663
PaeR7I CTCGAG 1 cut(s) 788
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 4 cut(s) 595, 754, 795, 926
PflFI GACNNNGTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 15
PleI GAGTC 2 cut(s) 324, 423
PpsI GAGTC 2 cut(s) 324, 423
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 840, 942
PspGI CCWGG 2 cut(s) 840, 942
PspN4I GGNNCC 3 cut(s) 20, 68, 663
PspPI GGNCC 2 cut(s) 146, 389
PstNI CAGNNNCTG 1 cut(s) 641
PsyI GACNNNGTC 1 cut(s) 271
RsaI GTAC 2 cut(s) 500, 527
RsaNI GTAC 2 cut(s) 499, 526
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 3 cut(s) 102, 347, 746
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 2 cut(s) 146, 389
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 2 cut(s) 324, 424
ScrFI CCNGG 2 cut(s) 842, 944
SduI GDGCHC 2 cut(s) 23, 460
SfaNI GCATC 7 cut(s) 139, 243, 421, 647, 679, 697, 864
Sfr274I CTCGAG 1 cut(s) 788
SinI GGWCC 2 cut(s) 146, 389
SlaI CTCGAG 1 cut(s) 788
SmlI CTYRAG 5 cut(s) 27, 378, 788, 809, 835
SmoI CTYRAG 5 cut(s) 27, 378, 788, 809, 835
Sse9I AATT 8 cut(s) 71, 174, 240, 302, 419, 487, 695, 771
SsiI CCGC 3 cut(s) 88, 701, 845
SspMI CTAG 1 cut(s) 958
SstI GAGCTC 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 840, 942
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 3 cut(s) 42, 537, 920
TaqI TCGA 1 cut(s) 789
TasI AATT 8 cut(s) 71, 174, 240, 302, 419, 487, 695, 771
TatI WGTACW 1 cut(s) 498
TauI GCSGC 2 cut(s) 91, 703
TfiI GAWTC 4 cut(s) 595, 754, 795, 926
Tru1I TTAA 3 cut(s) 102, 347, 746
Tru9I TTAA 3 cut(s) 102, 347, 746
TseI GCWGC 8 cut(s) 76, 209, 291, 475, 514, 586, 589, 800
TspDTI ATGAA 2 cut(s) 246, 365
TspGWI ACGGA 1 cut(s) 747
Tth111I GACNNNGTC 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 146, 389
XagI CCTNNNNNAGG 2 cut(s) 27, 378
XapI RAATTY 2 cut(s) 240, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XhoI CTCGAG 1 cut(s) 788
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 958
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.