Rroxscaffold_1G00005890

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000315
Physical Location & Seq
Reverse (-)
7931105 .. 7935093
3989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005890.1

Sequence Viewer

Length: 438 bp
ATGGTGAAATTTGGACAAAGGAACGGGAAATCCAACAAGGCCGTGAAACTATCATCTGGTTCTGAATTGCTGATTTTGATGGATACCAATATCAACAGTGATCAGAGGCCTCCACCGGGTGGAGAAGCCCCAGATGACATCGGCAATTGGAGGATGTACTTGATGCCAGATTCAAGACAGAGAGTTGTCAACAAGATATTTGAAACGTTGAAGATGCATCTCCCCTTCTCTGGCCAAGAGGGGTTACTTGAACTGAAGAGAATTGGTTTAAGGTTTGAGGAAAAGGTGTATACTACCGCATCAAGCCAGTCGGATTATCTACGAACTATTGCTCTGAAGATGCTTACCATTGAGGGCAAGAAAGTTGCAACCAGTCCCCCCTCCAACCTGAAACGGCATCGTGTCCTTGCTTTTGAAACAGAGTATCAAGTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

9.65

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 48 - 123 1.4e-26 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AccI GTMKAC 1 cut(s) 290
AciI CCGC 1 cut(s) 297
AclI AACGTT 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 275, 356
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 116, 119, 230
AgsI TTSAA 5 cut(s) 174, 203, 211, 251, 416
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AoxI GGCC 3 cut(s) 39, 107, 232
ApoI RAATTY 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 16
BalI TGGCCA 1 cut(s) 234
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 26, 410
BciVI GTATCC 1 cut(s) 76
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 6 cut(s) 153, 204, 226, 308, 330, 406
BpuMI CCSGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 119, 230
Bse1I ACTGG 2 cut(s) 307, 372
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 116, 119, 230
BseNI ACTGG 2 cut(s) 307, 372
BshFI GGCC 3 cut(s) 41, 109, 234
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 3 cut(s) 116, 119, 230
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 3 cut(s) 41, 109, 234
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 297
BspANI GGCC 3 cut(s) 41, 109, 234
BsrI ACTGG 2 cut(s) 307, 372
BssMI GATC 1 cut(s) 100
BssNAI GTATAC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 251
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 115
BstZ17I GTATAC 1 cut(s) 291
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 3 cut(s) 41, 109, 234
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 103
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 5 cut(s) 41, 109, 128, 234, 306
CviKI_1 RGCY 5 cut(s) 41, 109, 128, 234, 306
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraIII CACNNNGTG 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco147I AGGCCT 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 275, 356
EcoT22I ATGCAT 1 cut(s) 219
FaiI YATR 2 cut(s) 291, 436
FaqI GGGAC 1 cut(s) 360
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 1 cut(s) 290
FokI GGATG 1 cut(s) 166
HaeIII GGCC 3 cut(s) 41, 109, 234
HapII CCGG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 190, 291
Hpy188I TCNGA 4 cut(s) 64, 105, 313, 336
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 2 cut(s) 190, 291
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 217, 368
HpySE526I ACGT 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 42, 129, 144, 180, 216, 320, 385, 401
LweI GCATC 6 cut(s) 153, 204, 226, 308, 330, 406
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 243
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 223, 268, 349
MfeI CAATTG 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 4 cut(s) 8, 65, 145, 261
MluNI TGGCCA 1 cut(s) 234
MmeI TCCRAC 3 cut(s) 57, 291, 408
MnlI CCTC 7 cut(s) 99, 120, 144, 232, 271, 346, 391
Mox20I TGGCCA 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 219
MscI TGGCCA 1 cut(s) 234
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 234
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 145
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 219
PceI AGGCCT 1 cut(s) 109
PfeI GAWTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 206
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 209, 275, 288, 390
SfaNI GCATC 6 cut(s) 153, 204, 226, 308, 330, 406
Sse9I AATT 4 cut(s) 8, 65, 145, 261
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 1 cut(s) 297
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 209
TasI AATT 4 cut(s) 8, 65, 145, 261
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 103
TspRI CASTG 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.