Rh5BG520800

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000315
Physical Location & Seq
Forward (+)
82338078 .. 82341877
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG520800.1

Sequence Viewer

Length: 2133 bp
ATGGAGGCCAAGTCTCAGACCAAAATGGCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAAAACATTCAAAGTAACATTCCACCTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTACCCCCTACCTCTGGGCTCAGCTTATCATCTGACGTGAACATTTCTAGTTCATCATTTGAACTATTTCCTATCTGCGGTCTAGTTCCCTCGAAGAAGGATGCAGTCCAGTCAGATTGGAAGGCTCATAGCAAGATTTGCGGGGCTAGTGAGTATAGATGTGACTGTGGCACACTCTTTTCCAGGAATGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCATTGGCCGCTGAAGAAAGTGCAAGGTTTGGTTCAACTTCAACAGCCACCAACATTAATATTCCGAGCTTCATGTCGGACTCATCTTCCGCTTTACCTCCTGCCTTCAGTCTAGACTTATTGACTAATTATCATAGGCAAATGCAAGGACAGCAACAGGTAGTTCCTCAACAGCAACAGCAGCAATCAAAGTATTCACAGCAGCGGATTTCTCAGCAACAGATACAACAAGAACTTATCCGAAATATCCAACAGCAACAAGAGCAGCAGCAGATGCTATTACAAAAAACACCATTGTCATCTTCTCAGCAATCTCATGTACAATCAGCATCTTCTGCAGTGGAATCTTTTCTCTGTAGGCTTCAGCAGAATCAACAATTAGCTATTTCCCAGTTGACACAACCCATGCTTCAGCAAACAGCAATGCCACAACAGCAAATATTGCCGCCACAGCATCAACAGCAACAGTTAACAGCATCTCTGGATTCCACGGCCCAGATTCAAGATAAAAATGGAGCTGATTGGCAAGAGGAGGTCTATCAAAAGATAAAAGTCATGAAGGAGACATACCTAACCACACTAAGAGAGATATACCAGAAAAATGTTACTAAACTTCAGCAGCTCGAATCTTTGCCACAACAGCCTAAGTCGTATCAGCTTGAGAAGCTGAAAATGCTTAAGACCATGCTGGAGCACCTCATAACAGTGTTACAGGTTTCCAAAAGTAACATTTCACCTGTTTTGAAGTGGAAGTTGGGTTTATATGAGAAGCAGATAATAGCTTTCATTAATACAAATAGACCCAAGAAGCTTGATTCTTCTCTGCAACAAGGGCACCTCCCTTCACCTCATTTGCACTCCATAGAGCACTCCCAATCCCAAATTACTCAAGTGCAATCTCATGAAAATCATATGAGTCCCCAACTGCATTCAATGAACTTACAAGGATCTGTGGAAACAATGCAGCAGAACAACGTGACAGGCTTGCAGCAAAACTGTGTGTCTTCTTTGTCAGGGGTTTCAACTGCACAGCAGAACCCGATGAATCCATTGCAATCAAGTTCCAACACAGATCCAGGACTAGGAAACCCACTGTACTCATCACAGCAGGTCCCTGTTAGTTCTATCCAAGAAATCTGTGTCAGTGGTCCCCAACAAGCTAACAAGAATGCCTTGTCATCACAGAGTGGGATTAACATGCTGCAAGCAAACATTAATCCCCTTCAGTCAAATTCTGATTTTCTTCATAACCGATATCTGCAACAAGGACAGCAATTGAAACAGATTATACTCGAAAAACTGAATGAACAGCGACAGCCGCAGGAGCAGTTGATGCAGAAGCAGCAGATATTTCAACAACAACAGCAGCTGCTGCCTGGACAGTTGGAGTCCCAGCTTCACCAAATCAGTGTTGTTAATGACATGAACATGAATCCCTTGTCATCAGCACAGAGTGGGAGTGATATGCTGCAGGGAAGCATTGATTCCCTCAAGTCAAATTCTGGTATGGTTGATAACCAGTGTCAGAAGCAAGAAACTTTCTCTGTGAACTTCAAGCAACTGTATCCACAGCTACAGATGCAGCAGCAATGCATGCAGAAACCGCAGATGCTTCAAGAAAAGCAACAGCAGCAGATACAGCAACAAGCAAAGCAGCGGCTGCATCTTATTTATTTCATCTATCTCATCTTTCTCGTTATTCTATACATTGCTGCTGTTTTCGGGAAAGGCTATTGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

710

Amino Acids

79.62

Weight (kDa)

8.2

Isoelectric Point (pI)

70.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2CH-3rd_BIRD-IDD PF22995 87 - 104 8.7e-07 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 107 - 145 2.2e-20 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 2 cut(s) 139, 1489
AccB1I GGYRCC 1 cut(s) 1224
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 9 cut(s) 246, 309, 399, 480, 595, 836, 1709, 1994, 2047
AclWI GGATC 2 cut(s) 1345, 1457
AcoI YGGCCR 2 cut(s) 27, 396
AcsI RAATTY 3 cut(s) 145, 1621, 1888
AcuI CTGAAG 6 cut(s) 423, 481, 737, 785, 989, 1598
AdeI CACNNNGTG 2 cut(s) 1577, 1844
AfaI GTAC 2 cut(s) 711, 1487
AfiI CCNNNNNNNGG 4 cut(s) 134, 182, 245, 1472
AflII CTTAAG 1 cut(s) 1067
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 3 cut(s) 350, 1465, 1765
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
Alw21I GWGCWC 2 cut(s) 1086, 1260
Alw26I GTCTC 2 cut(s) 18, 947
AlwI GGATC 2 cut(s) 1345, 1457
AlwNI CAGNNNCTG 3 cut(s) 1759, 1762, 2050
AoxI GGCC 4 cut(s) 6, 27, 396, 882
ApoI RAATTY 3 cut(s) 145, 1621, 1888
AseI ATTAAT 3 cut(s) 447, 1179, 1605
Asp700I GAANNNNTTC 3 cut(s) 111, 234, 738
AspS9I GGNCC 3 cut(s) 883, 1501, 1538
AsuHPI GGTGA 4 cut(s) 73, 1116, 1227, 1781
AvaII GGWCC 2 cut(s) 1501, 1538
BaeGI GKGCMC 1 cut(s) 1227
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 1224
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 941, 973
BbsI GAAGAC 2 cut(s) 51, 1386
Bbv12I GWGCWC 2 cut(s) 1086, 1260
BceAI ACGGC 1 cut(s) 897
BciT130I CCWGG 3 cut(s) 352, 1467, 1767
BciVI GTATCC 1 cut(s) 1965
BcoDI GTCTC 2 cut(s) 18, 947
BfaI CTAG 5 cut(s) 216, 251, 315, 503, 1472
BfmI CTRYAG 4 cut(s) 726, 745, 1859, 1964
BfrI CTTAAG 1 cut(s) 1067
BfuAI ACCTGC 2 cut(s) 139, 1489
BfuI GTATCC 1 cut(s) 1965
BlpI GCTNAGC 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 352, 1467, 1767
Bme18I GGWCC 2 cut(s) 1501, 1538
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 883, 1501, 1538
BmiI GGNNCC 3 cut(s) 1226, 1503, 1540
BmrFI CCNGG 3 cut(s) 352, 1467, 1767
BmrI ACTGGG 1 cut(s) 775
BmuI ACTGGG 1 cut(s) 775
BpiI GAAGAC 2 cut(s) 51, 1386
BpmI CTGGAG 2 cut(s) 156, 1100
Bpu1102I GCTNAGC 1 cut(s) 188
BpuEI CTTGAG 4 cut(s) 60, 1070, 1263, 1865
BsaJI CCNNGG 1 cut(s) 879
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 182, 245, 1472
Bse1I ACTGG 3 cut(s) 277, 781, 1909
Bse3DI GCAATG 4 cut(s) 819, 1439, 1985, 2097
BseBI CCWGG 3 cut(s) 352, 1467, 1767
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 134, 182, 245, 1472
BseMI GCAATG 4 cut(s) 819, 1439, 1985, 2097
BseMII CTCAG 4 cut(s) 29, 202, 617, 710
BseNI ACTGG 3 cut(s) 277, 781, 1909
BseRI GAGGAG 1 cut(s) 935
BseSI GKGCMC 1 cut(s) 1227
BseYI CCCAGC 2 cut(s) 53, 1782
BsgI GTGCAG 2 cut(s) 150, 1401
BshFI GGCC 4 cut(s) 8, 29, 398, 884
BshNI GGYRCC 1 cut(s) 1224
BsiHKAI GWGCWC 2 cut(s) 1086, 1260
BslFI GGGAC 4 cut(s) 1293, 1487, 1524, 1765
BslI CCNNNNNNNGG 4 cut(s) 134, 182, 245, 1472
BsmAI GTCTC 2 cut(s) 18, 947
BsmFI GGGAC 4 cut(s) 1293, 1487, 1524, 1765
BsmI GAATGC 2 cut(s) 1318, 1564
BsnI GGCC 4 cut(s) 8, 29, 398, 884
Bsp1286I GDGCHC 4 cut(s) 189, 1086, 1227, 1260
Bsp1407I TGTACA 1 cut(s) 709
Bsp143I GATC 2 cut(s) 1337, 1462
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 9 cut(s) 246, 309, 399, 480, 595, 836, 1709, 1994, 2047
BspANI GGCC 4 cut(s) 8, 29, 398, 884
BspCNI CTCAG 4 cut(s) 28, 201, 616, 709
BspHI TCATGA 2 cut(s) 945, 1291
BspLI GGNNCC 3 cut(s) 1226, 1503, 1540
BspMAI CTGCAG 2 cut(s) 730, 1863
BspMI ACCTGC 2 cut(s) 139, 1489
BspPI GGATC 2 cut(s) 1345, 1457
BspT107I GGYRCC 1 cut(s) 1224
BspTI CTTAAG 1 cut(s) 1067
BsrDI GCAATG 4 cut(s) 819, 1439, 1985, 2097
BsrGI TGTACA 1 cut(s) 709
BsrI ACTGG 3 cut(s) 277, 781, 1909
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 2 cut(s) 1337, 1462
Bst2UI CCWGG 3 cut(s) 352, 1467, 1767
Bst4CI ACNGT 7 cut(s) 335, 858, 1096, 1388, 1485, 1773, 1953
BstAFI CTTAAG 1 cut(s) 1067
BstAPI GCANNNNNTGC 8 cut(s) 306, 664, 725, 832, 1723, 1762, 1984, 2050
BstAUI TGTACA 1 cut(s) 709
BstC8I GCNNGC 4 cut(s) 154, 1376, 1596, 1985
BstDEI CTNAG 6 cut(s) 15, 188, 603, 696, 971, 1035
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 2 cut(s) 1340, 1465
BstMAI GTCTC 2 cut(s) 18, 947
BstMBI GATC 2 cut(s) 1337, 1462
BstNI CCWGG 3 cut(s) 352, 1467, 1767
BstNSI RCATGY 2 cut(s) 1591, 1987
BstSCI CCNGG 3 cut(s) 350, 1465, 1765
BstSFI CTRYAG 4 cut(s) 726, 745, 1859, 1964
BstSLI GKGCMC 1 cut(s) 1227
BstV2I GAAGAC 2 cut(s) 51, 1386
BstX2I RGATCY 2 cut(s) 1337, 1462
BstYI RGATCY 2 cut(s) 1337, 1462
BsuI GTATCC 1 cut(s) 1965
BsuRI GGCC 4 cut(s) 8, 29, 398, 884
BtgI CCRYGG 1 cut(s) 879
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 6 cut(s) 735, 1101, 1481, 1540, 1804, 1916
BveI ACCTGC 2 cut(s) 139, 1489
Cac8I GCNNGC 4 cut(s) 154, 1376, 1596, 1985
CaiI CAGNNNCTG 3 cut(s) 1759, 1762, 2050
CciI TCATGA 2 cut(s) 945, 1291
Cfr13I GGNCC 3 cut(s) 883, 1501, 1538
Csp6I GTAC 2 cut(s) 710, 1486
CviQI GTAC 2 cut(s) 710, 1486
DdeI CTNAG 6 cut(s) 15, 188, 603, 696, 971, 1035
DpnI GATC 2 cut(s) 1339, 1464
DpnII GATC 2 cut(s) 1337, 1462
DraIII CACNNNGTG 2 cut(s) 1577, 1844
EaeI YGGCCR 2 cut(s) 27, 396
Eco24I GRGCYC 1 cut(s) 189
Eco32I GATATC 1 cut(s) 1646
Eco47I GGWCC 2 cut(s) 1501, 1538
Eco57I CTGAAG 6 cut(s) 423, 481, 737, 785, 989, 1598
EcoO109I RGGNCCY 1 cut(s) 1501
EcoRII CCWGG 3 cut(s) 350, 1465, 1765
EcoRV GATATC 1 cut(s) 1646
EcoT22I ATGCAT 2 cut(s) 394, 1985
EcoT38I GRGCYC 1 cut(s) 189
FalI AAGNNNNNCTT 2 cut(s) 1547, 1579
FaqI GGGAC 4 cut(s) 1293, 1487, 1524, 1765
FauI CCCGC 1 cut(s) 302
FauNDI CATATG 1 cut(s) 1302
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 189
FspBI CTAG 5 cut(s) 216, 251, 315, 503, 1472
GsaI CCCAGC 2 cut(s) 57, 1786
GsuI CTGGAG 2 cut(s) 156, 1100
HaeIII GGCC 4 cut(s) 8, 29, 398, 884
HincII GTYRAC 2 cut(s) 786, 861
HindII GTYRAC 2 cut(s) 786, 861
HindIII AAGCTT 1 cut(s) 1199
HpaI GTTAAC 1 cut(s) 861
HphI GGTGA 4 cut(s) 73, 1116, 1227, 1781
Hpy166II GTNNAC 4 cut(s) 208, 786, 861, 1939
Hpy188I TCNGA 9 cut(s) 18, 106, 202, 283, 456, 469, 632, 1627, 1917
Hpy188III TCNNGA 7 cut(s) 503, 872, 893, 946, 1292, 2006, 2113
Hpy8I GTNNAC 4 cut(s) 208, 786, 861, 1939
HpyAV CCTTC 6 cut(s) 259, 283, 505, 943, 1242, 1622
HpyCH4III ACNGT 7 cut(s) 335, 858, 1096, 1388, 1485, 1773, 1953
HpyCH4IV ACGT 2 cut(s) 204, 1365
HpyF3I CTNAG 6 cut(s) 15, 188, 603, 696, 971, 1035
HpySE526I ACGT 2 cut(s) 204, 1365
KspAI GTTAAC 1 cut(s) 861
Kzo9I GATC 2 cut(s) 1337, 1462
LmnI GCTCC 3 cut(s) 905, 1081, 1714
MaeI CTAG 5 cut(s) 216, 251, 315, 503, 1472
MaeII ACGT 2 cut(s) 204, 1365
MaeIII GTNAC 7 cut(s) 79, 119, 329, 994, 1098, 1115, 1366
MalI GATC 2 cut(s) 1339, 1464
MboI GATC 2 cut(s) 1337, 1462
MboII GAAGA 9 cut(s) 51, 274, 416, 468, 684, 714, 1200, 1386, 1625
MfeI CAATTG 1 cut(s) 1664
MflI RGATCY 2 cut(s) 1337, 1462
MhlI GDGCHC 4 cut(s) 189, 1086, 1227, 1260
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 8 cut(s) 31, 145, 517, 767, 1272, 1621, 1664, 1888
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 3 cut(s) 464, 1315, 1787
MmeI TCCRAC 5 cut(s) 69, 447, 664, 1479, 1755
Mox20I TGGCCA 1 cut(s) 29
Mph1103I ATGCAT 2 cut(s) 394, 1985
MroXI GAANNNNTTC 3 cut(s) 111, 234, 738
MscI TGGCCA 1 cut(s) 29
MseI TTAA 8 cut(s) 447, 860, 1068, 1179, 1584, 1605, 1806, 2131
MslI CAYNNNNRTG 2 cut(s) 1094, 1817
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 4 cut(s) 401, 595, 1759, 2047
MspCI CTTAAG 1 cut(s) 1067
MspR9I CCNGG 3 cut(s) 352, 1467, 1767
MunI CAATTG 1 cut(s) 1664
Mva1269I GAATGC 2 cut(s) 1318, 1564
MvaI CCWGG 3 cut(s) 352, 1467, 1767
NdeI CATATG 1 cut(s) 1302
NdeII GATC 2 cut(s) 1337, 1462
NlaIV GGNNCC 3 cut(s) 1226, 1503, 1540
NmuCI GTSAC 3 cut(s) 79, 329, 1366
NsiI ATGCAT 2 cut(s) 394, 1985
NspI RCATGY 2 cut(s) 1591, 1987
PaeI GCATGC 1 cut(s) 1987
PagI TCATGA 2 cut(s) 945, 1291
PaqCI CACCTGC 1 cut(s) 139
PctI GAATGC 2 cut(s) 1318, 1564
PdmI GAANNNNTTC 3 cut(s) 111, 234, 738
PfeI GAWTC 9 cut(s) 734, 760, 875, 889, 1016, 1205, 1435, 1822, 1874
PflMI CCANNNNNTGG 1 cut(s) 134
PfoI TCCNGGA 2 cut(s) 350, 1465
PleI GAGTC 3 cut(s) 464, 1314, 1786
PpsI GAGTC 3 cut(s) 464, 1314, 1786
PpuMI RGGWCCY 1 cut(s) 1501
PshBI ATTAAT 3 cut(s) 447, 1179, 1605
Psp5II RGGWCCY 1 cut(s) 1501
Psp6I CCWGG 3 cut(s) 350, 1465, 1765
PspFI CCCAGC 2 cut(s) 53, 1782
PspGI CCWGG 3 cut(s) 350, 1465, 1765
PspN4I GGNNCC 3 cut(s) 1226, 1503, 1540
PspPI GGNCC 3 cut(s) 883, 1501, 1538
PspPPI RGGWCCY 1 cut(s) 1501
PstI CTGCAG 2 cut(s) 730, 1863
PstNI CAGNNNCTG 3 cut(s) 1759, 1762, 2050
PsuI RGATCY 2 cut(s) 1337, 1462
PvuII CAGCTG 1 cut(s) 1759
RsaI GTAC 2 cut(s) 711, 1487
RsaNI GTAC 2 cut(s) 710, 1486
RseI CAYNNNNRTG 2 cut(s) 1094, 1817
SaqAI TTAA 8 cut(s) 447, 860, 1068, 1179, 1584, 1605, 1806, 2131
Sau3AI GATC 2 cut(s) 1337, 1462
Sau96I GGNCC 3 cut(s) 883, 1501, 1538
SchI GAGTC 3 cut(s) 464, 1315, 1787
ScrFI CCNGG 3 cut(s) 352, 1467, 1767
SduI GDGCHC 4 cut(s) 189, 1086, 1227, 1260
SfcI CTRYAG 4 cut(s) 726, 745, 1859, 1964
SinI GGWCC 2 cut(s) 1501, 1538
SmiMI CAYNNNNRTG 2 cut(s) 1094, 1817
SmlI CTYRAG 5 cut(s) 75, 1049, 1067, 1278, 1880
SmoI CTYRAG 5 cut(s) 75, 1049, 1067, 1278, 1880
SphI GCATGC 1 cut(s) 1987
Sse9I AATT 8 cut(s) 31, 145, 517, 767, 1272, 1621, 1664, 1888
SsiI CCGC 9 cut(s) 246, 309, 399, 480, 595, 836, 1709, 1994, 2047
SspI AATATT 2 cut(s) 451, 831
SspMI CTAG 5 cut(s) 216, 251, 315, 503, 1472
StyD4I CCNGG 3 cut(s) 350, 1465, 1765
TaaI ACNGT 7 cut(s) 335, 858, 1096, 1388, 1485, 1773, 1953
TaiI ACGT 2 cut(s) 207, 1368
TaqI TCGA 3 cut(s) 260, 1014, 1683
TasI AATT 8 cut(s) 31, 145, 517, 767, 1272, 1621, 1664, 1888
TatI WGTACW 2 cut(s) 709, 1485
TauI GCSGC 4 cut(s) 401, 838, 1711, 2050
TfiI GAWTC 9 cut(s) 734, 760, 875, 889, 1016, 1205, 1435, 1822, 1874
Tru1I TTAA 8 cut(s) 447, 860, 1068, 1179, 1584, 1605, 1806, 2131
Tru9I TTAA 8 cut(s) 447, 860, 1068, 1179, 1584, 1605, 1806, 2131
TscAI CASTG 6 cut(s) 735, 1101, 1488, 1540, 1804, 1916
TseFI GTSAC 3 cut(s) 79, 329, 1366
Tsp45I GTSAC 3 cut(s) 79, 329, 1366
TspRI CASTG 6 cut(s) 735, 1101, 1488, 1540, 1804, 1916
Van91I CCANNNNNTGG 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 1067
VpaK11BI GGWCC 2 cut(s) 1501, 1538
VspI ATTAAT 3 cut(s) 447, 1179, 1605
XapI RAATTY 3 cut(s) 145, 1621, 1888
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 2 cut(s) 1591, 1987
XmnI GAANNNNTTC 3 cut(s) 111, 234, 738
XspI CTAG 5 cut(s) 216, 251, 315, 503, 1472
Zsp2I ATGCAT 2 cut(s) 394, 1985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.