Rmu_sc0002652.1_g000027

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002652.1
OG0000315
Physical Location & Seq
Reverse (-)
81669 .. 83840
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002652.1_g000027.1.cds

Sequence Viewer

Length: 1251 bp
atggataacaacaatgggattcctcctcaaggtggagagcctgcaatggatgcaggagattggaggagccaattgcaggcggattcgcggcaaagaattgtcaataagatgatggatacattgaagaggcatcttcctttctccggtcaagagggattggatgaactcaagaaaattgctgttagatttgaggaaaagatttatgtggctgccacaagtcagtcagattatctacggaaaatttctctaaagatgctcaatatggacaccaagtctcagaaaacaatggcgaattctttacaatccaactctgctgggtcttctggtatgcaacctcaagtcgccaatcaaggacaactcttatcagagaacattcaaagtaacattccacctgctggagttcaaaattctactggcttatcatctgcactacctcctacctccgggccacaacagcaaatattgcccccacaacatcaaccgcagcaattaattgcatctttggattccacagcccagactgggaatacaaatggagctgattggaaagaggaggtctatcaaaagtatcaaaagaagatgcagaagctgtatatatttcaacatgatgtacaacgacagaaagagcagcagcagcagctgcctggacaattgcagcccgagctacaccaaatcagtgttgttaacgacgtcaacacgaatgccctgtcatcatcacagagtgggattaacatgttgcaggcaaacgttattccacccagtattcttcagaatcaactccaaatccagctactacatcagcgacagatgcagctgcagttgatggagaagcagcagagaattcagcaacagcagcaagcaaagcagcaggtgcctggactgtcacaggcacaccaactaccacagcttcaccaaatcagtgttgttaaagacgttaatgtggatgcctcgtcatcacaaactgggagtagtatgctgcaggcaaacattgatccccctcagccaaaatctattattgttgataacaagcatctgaagcaagatcaggagcagaaaatgtttcagaatcaactgaagcaaccatatcagcagcaatggatgcagaagcagcagatgcttcaagaaatgcaacagctgcagatacaaaaactacaacagcaagcaaagcagcagctgcatcatatttatgttatatatctcatctttctcaccattctgttgggtgctgcctttttcgggactggctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

416

Amino Acids

47.02

Weight (kDa)

9.11

Isoelectric Point (pI)

65.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 400, 859
AatII GACGTC 1 cut(s) 693
Acc36I ACCTGC 2 cut(s) 400, 859
AccB1I GGYRCC 1 cut(s) 871
AccB7I CCANNNNNTGG 1 cut(s) 395
AccII CGCG 1 cut(s) 88
AciI CCGC 3 cut(s) 80, 88, 482
AclI AACGTT 1 cut(s) 747
AclWI GGATC 1 cut(s) 986
AcsI RAATTY 4 cut(s) 240, 292, 406, 840
AcuI CTGAAG 3 cut(s) 752, 1055, 1094
AcyI GRCGYC 1 cut(s) 690
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 522, 1236
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 5 cut(s) 124, 377, 404, 602, 1121
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 643, 874
AluBI AGCT 9 cut(s) 539, 589, 640, 664, 790, 814, 907, 1135, 1174
AluI AGCT 9 cut(s) 539, 589, 640, 664, 790, 814, 907, 1135, 1174
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 1 cut(s) 986
AlwNI CAGNNNCTG 3 cut(s) 589, 640, 1174
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 1 cut(s) 446
ApoI RAATTY 4 cut(s) 240, 292, 406, 840
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AseI ATTAAT 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 2 cut(s) 902, 1201
AvaI CYCGRG 1 cut(s) 659
BanI GGYRCC 1 cut(s) 871
BbsI GAAGAC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 999
BccI CCATC 2 cut(s) 106, 817
BciT130I CCWGG 2 cut(s) 645, 876
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 279
BfmI CTRYAG 3 cut(s) 815, 977, 1136
BfuAI ACCTGC 2 cut(s) 400, 859
BfuI GTATCC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 445, 645, 876
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 68, 873
BmrFI CCNGG 3 cut(s) 445, 645, 876
BmrI ACTGGG 3 cut(s) 531, 753, 972
BmuI ACTGGG 3 cut(s) 531, 753, 972
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 999
BpuEI CTTGAG 3 cut(s) 12, 152, 321
BpuMI CCSGG 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 690
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 522, 1236
Bse1I ACTGG 5 cut(s) 418, 526, 759, 967, 1246
Bse3DI GCAATG 2 cut(s) 51, 1100
BseBI CCWGG 2 cut(s) 645, 876
BseGI GGATG 4 cut(s) 55, 166, 949, 1104
BseLI CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 522, 1236
BseMI GCAATG 2 cut(s) 51, 1100
BseMII CTCAG 2 cut(s) 290, 1013
BseNI ACTGG 5 cut(s) 418, 526, 759, 967, 1246
BseRI GAGGAG 3 cut(s) 15, 79, 566
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 871
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 2 cut(s) 144, 444
BslI CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 522, 1236
BsmAI GTCTC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 659
Bsp1407I TGTACA 1 cut(s) 610
Bsp143I GATC 2 cut(s) 991, 1042
BspACI CCGC 3 cut(s) 80, 88, 482
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 2 cut(s) 289, 1012
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 68, 873
BspMAI CTGCAG 3 cut(s) 819, 981, 1140
BspMI ACCTGC 2 cut(s) 400, 859
BspPI GGATC 1 cut(s) 986
BspT107I GGYRCC 1 cut(s) 871
BsrDI GCAATG 2 cut(s) 51, 1100
BsrGI TGTACA 1 cut(s) 610
BsrI ACTGG 5 cut(s) 418, 526, 759, 967, 1246
BssMI GATC 2 cut(s) 991, 1042
BssNI GRCGYC 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 645, 876
Bst4CI ACNGT 1 cut(s) 882
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 690
BstAPI GCANNNNNTGC 8 cut(s) 50, 463, 640, 871, 1099, 1114, 1135, 1174
BstAUI TGTACA 1 cut(s) 610
BstC8I GCNNGC 6 cut(s) 42, 78, 741, 858, 981, 1161
BstDEI CTNAG 2 cut(s) 276, 999
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 55, 166, 949, 1104
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 2 cut(s) 994, 1045
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 2 cut(s) 991, 1042
BstNI CCWGG 2 cut(s) 645, 876
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 3 cut(s) 443, 643, 874
BstSFI CTRYAG 3 cut(s) 815, 977, 1136
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 1219
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 448
BtsCI GGATG 4 cut(s) 55, 166, 949, 1104
BtsIMutI CAGTG 2 cut(s) 682, 925
BveI ACCTGC 2 cut(s) 400, 859
Cac8I GCNNGC 6 cut(s) 42, 78, 741, 858, 981, 1161
CaiI CAGNNNCTG 3 cut(s) 589, 640, 1174
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 611
CviAII CATG 2 cut(s) 605, 733
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 2 cut(s) 276, 999
DpnI GATC 2 cut(s) 993, 1044
DpnII GATC 2 cut(s) 991, 1042
DraIII CACNNNGTG 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 95
Eco57I CTGAAG 3 cut(s) 752, 1055, 1094
Eco88I CYCGRG 1 cut(s) 659
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRI GAATTC 2 cut(s) 292, 840
EcoRII CCWGG 2 cut(s) 643, 874
FaeI CATG 2 cut(s) 608, 736
FatI CATG 2 cut(s) 604, 732
FokI GGATG 4 cut(s) 62, 173, 956, 1111
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 417
HaeIII GGCC 1 cut(s) 448
HapII CCGG 2 cut(s) 144, 444
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 2 cut(s) 608, 736
HincII GTYRAC 2 cut(s) 685, 694
HindII GTYRAC 2 cut(s) 685, 694
HinfI GANTC 5 cut(s) 19, 83, 506, 772, 1066
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 2 cut(s) 144, 444
HphI GGTGA 2 cut(s) 902, 1201
Hpy166II GTNNAC 2 cut(s) 685, 694
Hpy188I TCNGA 6 cut(s) 226, 279, 367, 771, 1035, 1065
Hpy188III TCNNGA 5 cut(s) 149, 169, 1046, 1121, 1237
Hpy8I GTNNAC 2 cut(s) 685, 694
Hpy99I CGWCG 1 cut(s) 692
HpyCH4III ACNGT 1 cut(s) 882
HpyCH4IV ACGT 3 cut(s) 690, 747, 933
HpyF3I CTNAG 2 cut(s) 276, 999
HpySE526I ACGT 3 cut(s) 690, 747, 933
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 2 cut(s) 608, 736
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 2 cut(s) 991, 1042
LmnI GCTCC 3 cut(s) 66, 536, 1048
MaeII ACGT 3 cut(s) 690, 747, 933
MaeIII GTNAC 2 cut(s) 380, 882
MalI GATC 2 cut(s) 993, 1044
MboI GATC 2 cut(s) 991, 1042
MboII GAAGA 5 cut(s) 125, 136, 312, 589, 758
MfeI CAATTG 2 cut(s) 71, 650
MmeI TCCRAC 1 cut(s) 330
MseI TTAA 5 cut(s) 491, 684, 729, 927, 936
MslI CAYNNNNRTG 1 cut(s) 1185
MspA1I CMGCKG 4 cut(s) 640, 814, 1135, 1174
MspI CCGG 2 cut(s) 144, 444
MspR9I CCNGG 3 cut(s) 445, 645, 876
MunI CAATTG 2 cut(s) 71, 650
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 2 cut(s) 645, 876
MvnI CGCG 1 cut(s) 88
NciI CCSGG 1 cut(s) 445
NdeII GATC 2 cut(s) 991, 1042
NlaIII CATG 2 cut(s) 608, 736
NlaIV GGNNCC 2 cut(s) 68, 873
NmuCI GTSAC 1 cut(s) 882
NspI RCATGY 1 cut(s) 736
PaqCI CACCTGC 2 cut(s) 400, 859
PciI ACATGT 1 cut(s) 732
PctI GAATGC 1 cut(s) 706
PfeI GAWTC 5 cut(s) 19, 83, 506, 772, 1066
PflMI CCANNNNNTGG 1 cut(s) 395
PscI ACATGT 1 cut(s) 732
PshBI ATTAAT 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 643, 874
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 643, 874
PspN4I GGNNCC 2 cut(s) 68, 873
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 3 cut(s) 819, 981, 1140
PstNI CAGNNNCTG 3 cut(s) 589, 640, 1174
PvuII CAGCTG 4 cut(s) 640, 814, 1135, 1174
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 1 cut(s) 1185
SaqAI TTAA 5 cut(s) 491, 684, 729, 927, 936
Sau3AI GATC 2 cut(s) 991, 1042
Sau96I GGNCC 1 cut(s) 446
ScrFI CCNGG 3 cut(s) 445, 645, 876
SfcI CTRYAG 3 cut(s) 815, 977, 1136
SmiMI CAYNNNNRTG 1 cut(s) 1185
SmlI CTYRAG 3 cut(s) 27, 167, 336
SmoI CTYRAG 3 cut(s) 27, 167, 336
SsiI CCGC 3 cut(s) 80, 88, 482
SspI AATATT 1 cut(s) 462
StyD4I CCNGG 3 cut(s) 443, 643, 874
TaaI ACNGT 1 cut(s) 882
TaiI ACGT 3 cut(s) 693, 750, 936
TatI WGTACW 1 cut(s) 610
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 5 cut(s) 19, 83, 506, 772, 1066
Tru1I TTAA 5 cut(s) 491, 684, 729, 927, 936
Tru9I TTAA 5 cut(s) 491, 684, 729, 927, 936
TscAI CASTG 2 cut(s) 682, 925
TseFI GTSAC 1 cut(s) 882
Tsp45I GTSAC 1 cut(s) 882
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 2 cut(s) 682, 925
Van91I CCANNNNNTGG 1 cut(s) 395
VspI ATTAAT 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 4 cut(s) 240, 292, 406, 840
XceI RCATGY 1 cut(s) 736
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.