Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000315

Physical Location & Seq

Genomic Coordinates Forward (+)

80536696 .. 80537640

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAGTACAACGATGGGAGTCCCCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGACTGGAGGAGCCAATTGCCGGCGGATTTGCGGCAAAGAATTGTCAATAAGCTGATGGATACATTGAAGAGGCATCTTCCTTTCTCCAGTCAAGAGGGATTGGACGAACTCAAGAAAATTGCTGTTAGATTTGAGGAAAAGATTTATGGTGCTGCCACAAGTCAGACAGATTATCTACGGAAAATTTCTCTGAAGATGATCACTATGGAGACCAAGTCTCAGAACACAATGGCCAATTCTTTACAATCCAACTCTGCTGTACTGTCTTCTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCGCCTGCTGGAGTTCAAAATTCTGCTGACTTATCATCTGCACTAACCCCTACCTCTGGGCCCGGCTTATCATCTGTACTAGCTCCTACCCCGGCACTAAATACGTCTGTCTTACTATCTGCACTACCCCCTGCCCCTGGTAGAAATATGCCTGCCAGCTTATCATCTGCGTTACATTCTCCACAGGACATGAATATGTCTAGTTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0014070 GO:0016592 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042304 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045723 GO:0045834 GO:0045923 GO:0045935 GO:0046677 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

200

Amino Acids

21.28

Weight (kDa)

6.73

Isoelectric Point (pI)

67.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIX_2	PF16987	19 - 99	1.1e-34	KIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca	FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica	MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica	Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis	pycom03g02570 pycom03g02580
rosa_chinensis	RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata	RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora	Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa	Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha	Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana	Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	80, 88, 392
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	240, 409
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	8, 318, 468
AfiI	CCNNNNNNNGG	6 cut(s)	29, 32, 76, 398, 446, 527
AgsI	TTSAA	3 cut(s)	124, 380, 407
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	3 cut(s)	109, 473, 549
AluI	AGCT	3 cut(s)	109, 473, 549
Alw26I	GTCTC	3 cut(s)	51, 260, 279
AoxI	GGCC	2 cut(s)	288, 449
ApaI	GGGCCC	1 cut(s)	453
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	240, 409
AspS9I	GGNCC	2 cut(s)	449, 450
AsuC2I	CCSGG	2 cut(s)	453, 482
AsuHPI	GGTGA	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	8, 106
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	2 cut(s)	453, 482
BcoDI	GTCTC	3 cut(s)	51, 260, 279
BfaI	CTAG	2 cut(s)	470, 591
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	89, 210
BlsI	GCNGC	2 cut(s)	90, 211
Bme1390I	CCNGG	3 cut(s)	453, 482, 528
BmgT120I	GGNCC	2 cut(s)	449, 450
BmiI	GGNNCC	2 cut(s)	68, 451
BmrFI	CCNGG	3 cut(s)	453, 482, 528
BmsI	GCATC	2 cut(s)	40, 139
BpiI	GAAGAC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	3 cut(s)	82, 127, 420
BpuEI	CTTGAG	3 cut(s)	12, 152, 324
BpuMI	CCSGG	2 cut(s)	453, 482
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	480, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 32, 76, 398, 446, 527
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	65, 144
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	480, 526
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	6 cut(s)	29, 32, 76, 398, 446, 527
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	65, 144
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	2 cut(s)	414, 495
BshFI	GGCC	2 cut(s)	290, 451
BsiSI	CCGG	3 cut(s)	77, 453, 482
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	6 cut(s)	29, 32, 76, 398, 446, 527
BsmAI	GTCTC	3 cut(s)	51, 260, 279
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	290, 451
Bso31I	GGTCTC	1 cut(s)	260
Bsp120I	GGGCCC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	3 cut(s)	80, 88, 392
BspANI	GGCC	2 cut(s)	290, 451
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	68, 451
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	65, 144
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	480, 526
BssMI	GATC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	5 cut(s)	42, 78, 396, 543, 547
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	3 cut(s)	51, 260, 279
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	3 cut(s)	451, 480, 526
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	290, 451
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	5 cut(s)	42, 78, 396, 543, 547
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	449, 450
Csp6I	GTAC	3 cut(s)	7, 317, 467
CviAII	CATG	1 cut(s)	580
CviJI	RGCY	8 cut(s)	40, 69, 109, 290, 451, 456, 473, 549
CviKI_1	RGCY	8 cut(s)	40, 69, 109, 290, 451, 456, 473, 549
CviQI	GTAC	3 cut(s)	7, 317, 467
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	2 cut(s)	95, 381
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	1 cut(s)	583
FaiI	YATR	7 cut(s)	204, 263, 332, 539, 581, 587, 601
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	89, 210
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	89, 210
FspBI	CTAG	2 cut(s)	470, 591
GluI	GCNGC	2 cut(s)	89, 210
GsuI	CTGGAG	3 cut(s)	82, 127, 420
HaeIII	GGCC	2 cut(s)	290, 451
HapII	CCGG	3 cut(s)	77, 453, 482
Hin1II	CATG	1 cut(s)	583
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	3 cut(s)	77, 453, 482
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	222, 249, 279, 370
Hpy188III	TCNNGA	2 cut(s)	149, 169
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	44, 53, 334, 431, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	583
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	66, 478
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	40, 139
MaeI	CTAG	2 cut(s)	470, 591
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	3 cut(s)	343, 383, 561
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	4 cut(s)	125, 136, 262, 315
MfeI	CAATTG	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	453
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	71, 96, 174, 240, 292, 409
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	36, 57, 120, 145, 184, 348, 454
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	3 cut(s)	77, 453, 482
MspR9I	CCNGG	3 cut(s)	453, 482, 528
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	50
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	453, 482
NdeII	GATC	1 cut(s)	255
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	2 cut(s)	68, 451
NmuCI	GTSAC	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	90, 211
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	68, 451
PspOMI	GGGCCC	1 cut(s)	449
PspPI	GGNCC	2 cut(s)	449, 450
PsyI	GACNNNGTC	1 cut(s)	271
RsaI	GTAC	3 cut(s)	8, 318, 468
RsaNI	GTAC	3 cut(s)	7, 317, 467
RseI	CAYNNNNRTG	1 cut(s)	584
SatI	GCNGC	2 cut(s)	89, 210
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	2 cut(s)	449, 450
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	453, 482, 528
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	7 cut(s)	34, 111, 340, 446, 475, 497, 551
SfaNI	GCATC	2 cut(s)	40, 139
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	27, 167, 339
SmoI	CTYRAG	3 cut(s)	27, 167, 339
Sse9I	AATT	6 cut(s)	71, 96, 174, 240, 292, 409
SsiI	CCGC	3 cut(s)	80, 88, 392
SspMI	CTAG	2 cut(s)	470, 591
StyD4I	CCNGG	3 cut(s)	451, 480, 526
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	497
TasI	AATT	6 cut(s)	71, 96, 174, 240, 292, 409
TatI	WGTACW	3 cut(s)	6, 316, 466
TauI	GCSGC	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	17, 585, 596
TspGWI	ACGGA	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	240, 409
XspI	CTAG	2 cut(s)	470, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.