Rw5G046370

Mediator of RNA polymerase II transcription subunit 15a-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
80540394 .. 80545787
5394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046370.1

Sequence Viewer

Length: 2028 bp
ATGAACAGTGCCACGGGCTTTAGTATATTTAGAATATCAAAAAGAGAAGACTTATGTGTGTATCAAGAATCACTGTCATCGATCAAAGTTGTCAACTTTTCCTGCTCAGTTTTTCCTCCATATTTGTTGGGTTTGCGATTGTTCATGGATAACAACGATGGGAGTCCTCCTAACGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGAACAGACTGCAGGCGGATTCGCGGCAAAGAATTGTCAATAAGATAATGGATACATTGAAGAGGCATCTTCCTTTCTCCGGTCAAGAGGGATTGCATGAGCTAAAGAAAATTGCTGTTAGGTTCGAGGAAAAGATTTATACTGCTGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTGAAGATGCTCACTATGGAGGCCAAGTCTCAGACCAAAATGGCCAATTCTTTACAATCCAACTGTGCTGGGTCTTCTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCACTTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTACCCCCTACCTCTGGGCTCAGCTTATCATCTGACGTGAACATTTCTAGTTCATCATTTGAACTATTTCCTATCTGCGGTCTAGTTCCCTCGAAGAAGGACGCAGTCCAGTCAGATTGGAAGGCTCATAGCAAGATTTGCGGGGCTAGTGAGTATAGATGTGACTGTGGCACACTCTTTTCCAGGAATGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCATTGGCTGCTGAAAAAAGTGCAAGGTTTGGTTCAACTTCAACAGCCCCCAACATTAATATTCCGAGCTTCATGTCGGACTCATCTTCCGCTTTACCTCCTGCCTTCAGTCTAGACTTATTGACTAATTATCATAGGCAAATGCAAGGACAGCAACAGGTAGTTCCTCAACAGCAACAGCAGCGGATTTTTCAGCAACAGATACAACAAGAACTTATCCGAAATATCCAACAGCAACAAGAGCAGCAGCAGATGCTATTACAAAAAACACCATTGTCATCTTCTCAGCAATCTCATGTGCAATCAGCATCTTCTGCAGTGGAATCTTTTCTCTGTAGGCTTCAGCAGAATCAACAATTAGCTATTTCCCAGCTGGCACAACCCATGCTTCAGCAAACAGCAATGCCACAACAACAAATATTGCCGCCACAGCATCAACAGCAACAGTTAACAGCATCTCTGGATTCCACGGCCCAGATTCAAGATAAAAATGGAGCTGATTGGCAAGAGGAGGTCTATCAAAAGATAAAAGTCATGAAGGAGACATACCTAACCACACTAAGAGAGATATACCAGAAAAATGCTACTAAACTTCAGCAGCTCGAATCTTTGCCACAACAGCCTAAGTCGTATCAGCTTGAGAAGCTGAAAATGCTTAAGACCATGCTGGAGCACCTCATAACAGTGTTACAGGTTTCCAAAAGTAACATTTCACCTGTTTTGAAGTGGAAGTTGGGTTTATACGAGAAGCAGATAATAGCTTTCATTAATACAAATAGACCCAAGAAGCTTGATTCTTCTCTGCAACAAGGGCACCTCCCTTCACCTCATTTGCACTCCATAGAGCGCTCCCAATCCCAAATTACTCAAGTGCAATCTCATGAAAATCATATGAGTCCCCAACTGCATTCGATGAACTTACAAGGATCTGTGGCAACAATGCAGCAGAACAACGTGACAGGCTTGCAGCAAAACTATGTGTCTTCTTTGTCAGGGGTTTCAACTGCACAGCAGAACCCGATGAATCCATTGCAATCAAGTTCCAACACAGATCCAGGACAAGGAAACCCACTGTACTCATCACAGCAGGTCCCTGTTAGTGCTATCCAAGAAATCTGTGTCAGTGGTCCCCAACAAGCTAACAAGAATGCCTTGTCATCACAGAGTGGGATTAACATGCTGCAAGCAAACATTAATCCCCTTCATGTCAGAAGCAAGAAACTTTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

675

Amino Acids

74.97

Weight (kDa)

9.04

Isoelectric Point (pI)

66.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 67 - 146 2.1e-34 KIX domain
C2CH-3rd_BIRD-IDD PF22995 222 - 239 8.3e-07 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 242 - 277 2.1e-20 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1873
AccB1I GGYRCC 1 cut(s) 1608
AccB7I CCANNNNNTGG 1 cut(s) 539
AccII CGCG 1 cut(s) 232
AciI CCGC 7 cut(s) 224, 232, 651, 714, 885, 979, 1220
AclWI GGATC 2 cut(s) 1729, 1841
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 2 cut(s) 384, 550
AcuI CTGAAG 5 cut(s) 413, 886, 1121, 1169, 1373
AdeI CACNNNGTG 1 cut(s) 1961
AfaI GTAC 1 cut(s) 1871
AfeI AGCGCT 1 cut(s) 1643
AfiI CCNNNNNNNGG 7 cut(s) 173, 176, 287, 539, 587, 650, 1856
AflII CTTAAG 1 cut(s) 1451
AgsI TTSAA 9 cut(s) 268, 521, 548, 635, 831, 837, 1277, 1519, 1797
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 2 cut(s) 755, 1849
AjuI GAANNNNNNNTTGG 2 cut(s) 1511, 1543
Alw21I GWGCWC 1 cut(s) 1470
Alw26I GTCTC 2 cut(s) 423, 1331
AlwI GGATC 2 cut(s) 1729, 1841
Aor51HI AGCGCT 1 cut(s) 1643
AoxI GGCC 3 cut(s) 411, 432, 1266
ApeKI GCWGC 9 cut(s) 353, 803, 976, 1039, 1042, 1393, 1738, 1762, 1975
ApoI RAATTY 2 cut(s) 384, 550
AseI ATTAAT 3 cut(s) 852, 1563, 1989
Asp700I GAANNNNTTC 2 cut(s) 639, 1122
AspLEI GCGC 1 cut(s) 1644
AspS9I GGNCC 3 cut(s) 1267, 1885, 1922
AsuHPI GGTGA 3 cut(s) 478, 1500, 1611
AvaII GGWCC 2 cut(s) 1885, 1922
BaeGI GKGCMC 1 cut(s) 1611
BalI TGGCCA 1 cut(s) 434
BanI GGYRCC 1 cut(s) 1608
BanII GRGCYC 1 cut(s) 594
BarI GAAGNNNNNNTAC 2 cut(s) 1325, 1357
BbsI GAAGAC 3 cut(s) 54, 456, 1770
Bbv12I GWGCWC 1 cut(s) 1470
BbvI GCAGC 9 cut(s) 340, 790, 988, 1051, 1054, 1405, 1750, 1774, 1962
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 1281
BciT130I CCWGG 2 cut(s) 757, 1851
BciVI GTATCC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 423, 1331
BfaI CTAG 4 cut(s) 621, 656, 720, 908
BfmI CTRYAG 3 cut(s) 218, 1110, 1129
BfoI RGCGCY 1 cut(s) 1645
BfrI CTTAAG 1 cut(s) 1451
BfuAI ACCTGC 1 cut(s) 1873
BfuI GTATCC 1 cut(s) 253
BlpI GCTNAGC 1 cut(s) 593
Bme1390I CCNGG 2 cut(s) 757, 1851
Bme18I GGWCC 2 cut(s) 1885, 1922
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 3 cut(s) 1267, 1885, 1922
BmiI GGNNCC 3 cut(s) 1610, 1887, 1924
BmrFI CCNGG 2 cut(s) 757, 1851
BmsI GCATC 8 cut(s) 184, 283, 387, 784, 1038, 1112, 1237, 1259
BpiI GAAGAC 3 cut(s) 54, 456, 1770
BpmI CTGGAG 2 cut(s) 561, 1484
Bpu1102I GCTNAGC 1 cut(s) 593
BpuEI CTTGAG 3 cut(s) 465, 1454, 1647
Bsa29I ATCGAT 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 12, 1263
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 7 cut(s) 173, 176, 287, 539, 587, 650, 1856
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 3 cut(s) 195, 1203, 1823
BseBI CCWGG 2 cut(s) 757, 1851
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 12, 1263
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 7 cut(s) 173, 176, 287, 539, 587, 650, 1856
BseMI GCAATG 3 cut(s) 195, 1203, 1823
BseMII CTCAG 4 cut(s) 120, 434, 607, 1094
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 1 cut(s) 1319
BseSI GKGCMC 1 cut(s) 1611
BseXI GCAGC 9 cut(s) 340, 790, 988, 1051, 1054, 1405, 1750, 1774, 1962
BseYI CCCAGC 2 cut(s) 458, 1164
BsgI GTGCAG 2 cut(s) 555, 1785
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 413, 434, 1268
BshNI GGYRCC 1 cut(s) 1608
BshVI ATCGAT 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 1470
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 3 cut(s) 1677, 1871, 1908
BslI CCNNNNNNNGG 7 cut(s) 173, 176, 287, 539, 587, 650, 1856
BsmAI GTCTC 2 cut(s) 423, 1331
BsmFI GGGAC 3 cut(s) 1677, 1871, 1908
BsmI GAATGC 2 cut(s) 1702, 1948
BsnI GGCC 3 cut(s) 413, 434, 1268
Bsp1286I GDGCHC 3 cut(s) 594, 1470, 1611
Bsp143I GATC 3 cut(s) 81, 1721, 1846
Bsp1720I GCTNAGC 1 cut(s) 593
BspACI CCGC 7 cut(s) 224, 232, 651, 714, 885, 979, 1220
BspANI GGCC 3 cut(s) 413, 434, 1268
BspCNI CTCAG 4 cut(s) 119, 433, 606, 1093
BspDI ATCGAT 1 cut(s) 80
BspFNI CGCG 1 cut(s) 232
BspHI TCATGA 2 cut(s) 1329, 1675
BspLI GGNNCC 3 cut(s) 1610, 1887, 1924
BspMAI CTGCAG 2 cut(s) 222, 1114
BspMI ACCTGC 1 cut(s) 1873
BspPI GGATC 2 cut(s) 1729, 1841
BspT107I GGYRCC 1 cut(s) 1608
BspTI CTTAAG 1 cut(s) 1451
BsrDI GCAATG 3 cut(s) 195, 1203, 1823
BsrI ACTGG 1 cut(s) 682
BssECI CCNNGG 2 cut(s) 12, 1263
BssMI GATC 3 cut(s) 81, 1721, 1846
Bst2UI CCWGG 2 cut(s) 757, 1851
Bst4CI ACNGT 8 cut(s) 8, 75, 176, 455, 740, 1242, 1480, 1869
Bst6I CTCTTC 1 cut(s) 263
BstAFI CTTAAG 1 cut(s) 1451
BstAPI GCANNNNNTGC 5 cut(s) 194, 711, 803, 1048, 1109
BstC8I GCNNGC 6 cut(s) 186, 222, 559, 1170, 1760, 1980
BstDEI CTNAG 6 cut(s) 106, 420, 593, 1080, 1355, 1419
BstDSI CCRYGG 2 cut(s) 12, 1263
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 1645
BstHHI GCGC 1 cut(s) 1644
BstKTI GATC 3 cut(s) 84, 1724, 1849
BstMAI GTCTC 2 cut(s) 423, 1331
BstMBI GATC 3 cut(s) 81, 1721, 1846
BstNI CCWGG 2 cut(s) 757, 1851
BstNSI RCATGY 1 cut(s) 1975
BstSCI CCNGG 2 cut(s) 755, 1849
BstSFI CTRYAG 3 cut(s) 218, 1110, 1129
BstSLI GKGCMC 1 cut(s) 1611
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 9 cut(s) 340, 790, 988, 1051, 1054, 1405, 1750, 1774, 1962
BstV2I GAAGAC 3 cut(s) 54, 456, 1770
BstX2I RGATCY 2 cut(s) 1721, 1846
BstYI RGATCY 2 cut(s) 1721, 1846
Bsu15I ATCGAT 1 cut(s) 80
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 3 cut(s) 413, 434, 1268
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 2 cut(s) 12, 1263
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 6 cut(s) 13, 71, 1119, 1485, 1865, 1924
BveI ACCTGC 1 cut(s) 1873
Cac8I GCNNGC 6 cut(s) 186, 222, 559, 1170, 1760, 1980
CciI TCATGA 2 cut(s) 1329, 1675
CfoI GCGC 1 cut(s) 1644
Cfr13I GGNCC 3 cut(s) 1267, 1885, 1922
ClaI ATCGAT 1 cut(s) 80
CseI GACGC 1 cut(s) 683
Csp6I GTAC 1 cut(s) 1870
CviQI GTAC 1 cut(s) 1870
DdeI CTNAG 6 cut(s) 106, 420, 593, 1080, 1355, 1419
DpnI GATC 3 cut(s) 83, 1723, 1848
DpnII GATC 3 cut(s) 81, 1721, 1846
DraIII CACNNNGTG 1 cut(s) 1961
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 1885, 1922
Eco47III AGCGCT 1 cut(s) 1643
Eco57I CTGAAG 5 cut(s) 413, 886, 1121, 1169, 1373
EcoO109I RGGNCCY 1 cut(s) 1885
EcoRII CCWGG 2 cut(s) 755, 1849
EcoT22I ATGCAT 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 594
FalI AAGNNNNNCTT 2 cut(s) 1931, 1963
FaqI GGGAC 3 cut(s) 1677, 1871, 1908
FauI CCCGC 1 cut(s) 707
FauNDI CATATG 1 cut(s) 1686
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 594
FspBI CTAG 4 cut(s) 621, 656, 720, 908
GlaI GCGC 1 cut(s) 1643
GsaI CCCAGC 2 cut(s) 462, 1168
GsuI CTGGAG 2 cut(s) 561, 1484
HaeII RGCGCY 1 cut(s) 1645
HaeIII GGCC 3 cut(s) 413, 434, 1268
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 683
HhaI GCGC 1 cut(s) 1644
Hin6I GCGC 1 cut(s) 1642
HinP1I GCGC 1 cut(s) 1642
HincII GTYRAC 2 cut(s) 94, 1245
HindII GTYRAC 2 cut(s) 94, 1245
HindIII AAGCTT 1 cut(s) 1583
HpaI GTTAAC 1 cut(s) 1245
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 478, 1500, 1611
Hpy166II GTNNAC 3 cut(s) 94, 613, 1245
Hpy188III TCNNGA 7 cut(s) 65, 293, 908, 1256, 1277, 1330, 1676
Hpy8I GTNNAC 3 cut(s) 94, 613, 1245
HpyAV CCTTC 6 cut(s) 664, 688, 910, 1327, 1626, 2006
HpyCH4III ACNGT 8 cut(s) 8, 75, 176, 455, 740, 1242, 1480, 1869
HpyCH4IV ACGT 2 cut(s) 609, 1749
HpyF3I CTNAG 6 cut(s) 106, 420, 593, 1080, 1355, 1419
HpySE526I ACGT 2 cut(s) 609, 1749
HspAI GCGC 1 cut(s) 1642
KspAI GTTAAC 1 cut(s) 1245
Kzo9I GATC 3 cut(s) 81, 1721, 1846
LmnI GCTCC 3 cut(s) 1289, 1465, 1649
Lsp1109I GCAGC 9 cut(s) 340, 790, 988, 1051, 1054, 1405, 1750, 1774, 1962
LweI GCATC 8 cut(s) 184, 283, 387, 784, 1038, 1112, 1237, 1259
MaeI CTAG 4 cut(s) 621, 656, 720, 908
MaeII ACGT 2 cut(s) 609, 1749
MaeIII GTNAC 6 cut(s) 484, 524, 734, 1482, 1499, 1750
MalI GATC 3 cut(s) 83, 1723, 1848
MboI GATC 3 cut(s) 81, 1721, 1846
MflI RGATCY 2 cut(s) 1721, 1846
MhlI GDGCHC 3 cut(s) 594, 1470, 1611
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 8 cut(s) 240, 318, 384, 436, 550, 922, 1151, 1656
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 3 cut(s) 172, 869, 1699
MmeI TCCRAC 4 cut(s) 474, 852, 1048, 1863
Mox20I TGGCCA 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 799
MroXI GAANNNNTTC 2 cut(s) 639, 1122
MscI TGGCCA 1 cut(s) 434
MseI TTAA 6 cut(s) 852, 1244, 1452, 1563, 1968, 1989
MslI CAYNNNNRTG 1 cut(s) 1478
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 2 cut(s) 979, 1168
MspCI CTTAAG 1 cut(s) 1451
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 757, 1851
Mva1269I GAATGC 2 cut(s) 1702, 1948
MvaI CCWGG 2 cut(s) 757, 1851
MvnI CGCG 1 cut(s) 232
NdeI CATATG 1 cut(s) 1686
NdeII GATC 3 cut(s) 81, 1721, 1846
NlaIV GGNNCC 3 cut(s) 1610, 1887, 1924
NmuCI GTSAC 3 cut(s) 484, 734, 1750
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 1 cut(s) 1975
PagI TCATGA 2 cut(s) 1329, 1675
PctI GAATGC 2 cut(s) 1702, 1948
PdmI GAANNNNTTC 2 cut(s) 639, 1122
PfeI GAWTC 9 cut(s) 68, 227, 1118, 1144, 1259, 1273, 1400, 1589, 1819
PflFI GACNNNGTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 539
PfoI TCCNGGA 2 cut(s) 755, 1849
PleI GAGTC 3 cut(s) 171, 869, 1698
PpsI GAGTC 3 cut(s) 171, 869, 1698
PpuMI RGGWCCY 1 cut(s) 1885
PshBI ATTAAT 3 cut(s) 852, 1563, 1989
Psp5II RGGWCCY 1 cut(s) 1885
Psp6I CCWGG 2 cut(s) 755, 1849
PspFI CCCAGC 2 cut(s) 458, 1164
PspGI CCWGG 2 cut(s) 755, 1849
PspN4I GGNNCC 3 cut(s) 1610, 1887, 1924
PspPI GGNCC 3 cut(s) 1267, 1885, 1922
PspPPI RGGWCCY 1 cut(s) 1885
PstI CTGCAG 2 cut(s) 222, 1114
PsuI RGATCY 2 cut(s) 1721, 1846
PsyI GACNNNGTC 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 1168
RsaI GTAC 1 cut(s) 1871
RsaNI GTAC 1 cut(s) 1870
RseI CAYNNNNRTG 1 cut(s) 1478
SaqAI TTAA 6 cut(s) 852, 1244, 1452, 1563, 1968, 1989
Sau3AI GATC 3 cut(s) 81, 1721, 1846
Sau96I GGNCC 3 cut(s) 1267, 1885, 1922
SchI GAGTC 3 cut(s) 172, 869, 1699
ScrFI CCNGG 2 cut(s) 757, 1851
SduI GDGCHC 3 cut(s) 594, 1470, 1611
SfaNI GCATC 8 cut(s) 184, 283, 387, 784, 1038, 1112, 1237, 1259
SfcI CTRYAG 3 cut(s) 218, 1110, 1129
SinI GGWCC 2 cut(s) 1885, 1922
SmiMI CAYNNNNRTG 1 cut(s) 1478
SmlI CTYRAG 4 cut(s) 480, 1433, 1451, 1662
SmoI CTYRAG 4 cut(s) 480, 1433, 1451, 1662
Sse9I AATT 8 cut(s) 240, 318, 384, 436, 550, 922, 1151, 1656
SsiI CCGC 7 cut(s) 224, 232, 651, 714, 885, 979, 1220
SspI AATATT 2 cut(s) 856, 1215
SspMI CTAG 4 cut(s) 621, 656, 720, 908
StyD4I CCNGG 2 cut(s) 755, 1849
TaaI ACNGT 8 cut(s) 8, 75, 176, 455, 740, 1242, 1480, 1869
TaiI ACGT 2 cut(s) 612, 1752
TaqI TCGA 5 cut(s) 80, 333, 665, 1398, 1706
TasI AATT 8 cut(s) 240, 318, 384, 436, 550, 922, 1151, 1656
TatI WGTACW 1 cut(s) 1869
TauI GCSGC 2 cut(s) 235, 1222
TfiI GAWTC 9 cut(s) 68, 227, 1118, 1144, 1259, 1273, 1400, 1589, 1819
Tru1I TTAA 6 cut(s) 852, 1244, 1452, 1563, 1968, 1989
Tru9I TTAA 6 cut(s) 852, 1244, 1452, 1563, 1968, 1989
TscAI CASTG 6 cut(s) 13, 78, 1119, 1485, 1872, 1924
TseFI GTSAC 3 cut(s) 484, 734, 1750
TseI GCWGC 9 cut(s) 353, 803, 976, 1039, 1042, 1393, 1738, 1762, 1975
Tsp45I GTSAC 3 cut(s) 484, 734, 1750
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 6 cut(s) 13, 78, 1119, 1485, 1872, 1924
Tth111I GACNNNGTC 1 cut(s) 677
Van91I CCANNNNNTGG 1 cut(s) 539
Vha464I CTTAAG 1 cut(s) 1451
VpaK11BI GGWCC 2 cut(s) 1885, 1922
VspI ATTAAT 3 cut(s) 852, 1563, 1989
XapI RAATTY 2 cut(s) 384, 550
XbaI TCTAGA 1 cut(s) 907
XceI RCATGY 1 cut(s) 1975
XmnI GAANNNNTTC 2 cut(s) 639, 1122
XspI CTAG 4 cut(s) 621, 656, 720, 908
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.