RchiOBHm_Chr5g0075841

Mediator of RNA polymerase II transcription subunit 15a-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
81568337 .. 81573635
5299 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35054

Sequence Viewer

Length: 2499 bp
ATGGATAACAATGATGGGAGTCCTCCTAACGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGAACAGACTGCAGGCGGATTTGCGGCAAAGAATTGTCAATAAGACAATGGATACATTGAAGAGGCGTCTTCCTTTCTCCGGTCAAGAGGGATTGCATGAACTCAAGAAAATTGCTGTTAGGTTCGAGGAAAAGATTTATACTGCTGCCACAAGTCAGTCAGATTATCTACAGAAAATTTCTCTGAAGATGCTCACTATGGAGACCAAGTCTCAGACCAAAATGGCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCACCTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTACCCCCTACCTCTGGGCTCAGCTTATCATCTGTACTAGCTCCTACCCCGGCACTAAATACGTCTGCCTTATTATCTGCGCTACCCCCTGCCCCTCGTAGAAATATGCCTGCCAGCTTATCATCTGCGTTACCTTCTCCACAGGACGTGAACATTTCTAGTTCATCATTTGAACTATTTCCTATCTGCGGTCTAGTTCCCTCGAAGAAGGACGCAGTCCAGTCAGATTGGAAGGCTCATAGCAAGATTTGCAGGGCTAGTGAGTATAGATGTGACTGTGGCACACTCTTTTCCAGGAATGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCATTGGCCGCTGAAGAAAGTGCAAGGTTTGGTTCAACTTCAACAGCCACCAACATTAATATTCCGAGCTTCATGTCGGACTCATCTTCTGCTTTACCTCCTGCCTTCAGTCAAGACTTATTGACTAATTATCATAGGCAAATGCAAGGACAGCAACAGCAGCAATCAGGGTATTCACAGCAGCGGATTTCTCAGCAACGGATACAACAAGAACTTATCCGAAATATCCAACAGCAACAAGAGCAGCAGCAGATGCTATTACAAAAAACACCATTGTCATCTTCTCAGCAATCTCATGTACAATCAGCATCTTCTGCAGTGGAATCTTTTCTCTGTAGGCTTCAGCAGAATCAACAATTAGCTATTTCCCAGTTGACACAACCCATGCTTCAGCAAACAGCAATGCCACAACAGCAAATATTGCCGCCACAGCATCAACAGCAGCAGTTAACAGCATCTCTGGATTCCACGGCCCAGATTCAAGATAAAAATGGAGCTGATTGGCAAGAGGAGGTCTATCAAAAGATAAAAGTCATGAAGGAGACATACCTAACCACACTAAGAGAGATATACCAGAAAAATGCTACTAAACTTCAGCAGCTCGAATCTTTGCCACAACAGCCTAAGTCGTATCAGCTTGAGAAGCTGAAAATGCTTAAGACCATGCTGGAGCACCTCATAACAGTGTTACAGGTTTCCAAAAGTAACATTTCACCTGTTTTGAAGTGGAAGTTGGGTTTATACGAGAAGCAGATAATAGCTTTCATTAATACAAATAGACCCAAGAAGCTTGATTCTTCTCTGCAACAAGGGCACCTCCCTTCACCTCATTTGCACTCCATAGAGCACTCCCAATCCCAAATTACTCAAGTGCAATCTCATGAAAATCATATGAGTCCCCAACTGCATTCGATGAACTTACAAGGATCTGTGGCAACAATGCAGCAGAACAACGTGACAGGCTTGCAGCAAAACTATGTGTCTTCTTTGTCAGGGGTTTCAACTGCACAGCAGAACCCGATGAATCCATTGCAATCAAGTTCCAACACAGATCCAGGACAAGGAAACCCACTGTACTCATCACAGCAGGTCCCTGTTAGTTCTATCCAAGAAATCTGTGTCAGTGGTCCCCAACAAGCTAACAAGAATGCCTTGTCATCACAGAGTGGGATTAACATGCTGCAAGCAAACATTAATCCCCTTCAGTCAAATTCTGATTTTCTTCATAACCGATATCTGCAACAGGGACAGCAATTGAAACAGATTATTCTCGAAAAACTGAATGAACAGCGACAGCCGCAGGAGCAGTTGATGCAGAAGCAGCAGCAGCAGATATTTCAACAACAACAGCAGCTGCTGCCTGGACAGTTGGATCCCCAGCTTCACCAAATCAGTGTTGTTAATGACATGAACATGAATCCCTTGTCATCATCACAGAGTGGGAGTGATATGCTGCAGGGAAGCATTGATTCCCTCAAGTCAAATTCTGGTATGGTTGATAACCAGTGTCAGAAGCAAGAAACTTTCTCTGTGAACTTCAAGCAACTGTATCCACAGCTACAGATGCAGCAGCAATGGATGCAGAAACCGCAGATGCTTCAAGAAAAGCAACAGCAGCAGATACAGCAACTACAGCAACAAGCAAAGCAGCGGCTGCATCTTATTTATTTCATCTATCTCATCTTTCTCGTTATTCTATACATTGCTGCTGTTTTCGGGAAAGGCTATTGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

832

Amino Acids

93.2

Weight (kDa)

8.91

Isoelectric Point (pI)

71.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 98 4.4e-32 KIX domain
C2CH-4th_BIRD-IDD PF22992 231 - 269 2.6e-20 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 2 cut(s) 400, 1840
AccB1I GGYRCC 1 cut(s) 1575
AccB7I CCANNNNNTGG 1 cut(s) 395
AciI CCGC 9 cut(s) 80, 88, 618, 771, 946, 1187, 2060, 2351, 2413
AclWI GGATC 4 cut(s) 1696, 1808, 2129, 2142
AcoI YGGCCR 2 cut(s) 288, 768
AcsI RAATTY 4 cut(s) 240, 406, 1972, 2245
AcuI CTGAAG 7 cut(s) 269, 795, 853, 1088, 1136, 1340, 1949
AcyI GRCGYC 1 cut(s) 130
AdeI CACNNNGTG 2 cut(s) 1928, 2201
AfaI GTAC 3 cut(s) 465, 1062, 1838
AfiI CCNNNNNNNGG 7 cut(s) 29, 32, 143, 395, 443, 617, 1823
AflII CTTAAG 1 cut(s) 1418
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 3 cut(s) 722, 1816, 2122
AjuI GAANNNNNNNTTGG 2 cut(s) 1478, 1510
Alw21I GWGCWC 2 cut(s) 1437, 1611
Alw26I GTCTC 3 cut(s) 260, 279, 1298
AlwI GGATC 4 cut(s) 1696, 1808, 2129, 2142
AlwNI CAGNNNCTG 3 cut(s) 2116, 2119, 2416
AoxI GGCC 3 cut(s) 288, 768, 1233
ApoI RAATTY 4 cut(s) 240, 406, 1972, 2245
AseI ATTAAT 3 cut(s) 819, 1530, 1956
Asp700I GAANNNNTTC 2 cut(s) 606, 1089
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 3 cut(s) 1234, 1852, 1889
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 4 cut(s) 334, 1467, 1578, 2138
AvaII GGWCC 2 cut(s) 1852, 1889
BaeGI GKGCMC 1 cut(s) 1578
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 2134
BanI GGYRCC 1 cut(s) 1575
BanII GRGCYC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 1292, 1324
BbsI GAAGAC 3 cut(s) 125, 312, 1737
Bbv12I GWGCWC 2 cut(s) 1437, 1611
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 1248
BciT130I CCWGG 3 cut(s) 724, 1818, 2124
BciVI GTATCC 3 cut(s) 109, 957, 2322
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 3 cut(s) 260, 279, 1298
BfaI CTAG 4 cut(s) 467, 588, 623, 687
BfmI CTRYAG 7 cut(s) 74, 233, 1077, 1096, 2216, 2321, 2393
BfrI CTTAAG 1 cut(s) 1418
BfuAI ACCTGC 2 cut(s) 400, 1840
BfuI GTATCC 3 cut(s) 109, 957, 2322
BlpI GCTNAGC 1 cut(s) 449
Bme1390I CCNGG 4 cut(s) 479, 724, 1818, 2124
Bme18I GGWCC 2 cut(s) 1852, 1889
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 1234, 1852, 1889
BmiI GGNNCC 4 cut(s) 1577, 1854, 1891, 2136
BmrFI CCNGG 4 cut(s) 479, 724, 1818, 2124
BmrI ACTGGG 1 cut(s) 1126
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 3 cut(s) 125, 312, 1737
BpmI CTGGAG 2 cut(s) 417, 1451
Bpu1102I GCTNAGC 1 cut(s) 449
BpuEI CTTGAG 5 cut(s) 152, 321, 1421, 1614, 2222
BpuMI CCSGG 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 477, 1230
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 7 cut(s) 29, 32, 143, 395, 443, 617, 1823
Bse1I ACTGG 3 cut(s) 649, 1132, 2266
Bse3DI GCAATG 5 cut(s) 51, 1170, 1790, 2342, 2463
BseBI CCWGG 3 cut(s) 724, 1818, 2124
BseDI CCNNGG 2 cut(s) 477, 1230
BseGI GGATG 2 cut(s) 55, 2346
BseLI CCNNNNNNNGG 7 cut(s) 29, 32, 143, 395, 443, 617, 1823
BseMI GCAATG 5 cut(s) 51, 1170, 1790, 2342, 2463
BseMII CTCAG 4 cut(s) 290, 463, 968, 1061
BseNI ACTGG 3 cut(s) 649, 1132, 2266
BseRI GAGGAG 1 cut(s) 1286
BseSI GKGCMC 1 cut(s) 1578
BseYI CCCAGC 2 cut(s) 314, 2139
BsgI GTGCAG 2 cut(s) 411, 1752
BshFI GGCC 3 cut(s) 290, 770, 1235
BshNI GGYRCC 1 cut(s) 1575
BsiHKAI GWGCWC 2 cut(s) 1437, 1611
BsiSI CCGG 2 cut(s) 144, 479
BslFI GGGAC 4 cut(s) 1644, 1838, 1875, 2022
BslI CCNNNNNNNGG 7 cut(s) 29, 32, 143, 395, 443, 617, 1823
BsmAI GTCTC 3 cut(s) 260, 279, 1298
BsmFI GGGAC 4 cut(s) 1644, 1838, 1875, 2022
BsmI GAATGC 2 cut(s) 1669, 1915
BsnI GGCC 3 cut(s) 290, 770, 1235
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 4 cut(s) 450, 1437, 1578, 1611
Bsp1407I TGTACA 1 cut(s) 1060
Bsp143I GATC 3 cut(s) 1688, 1813, 2134
Bsp1720I GCTNAGC 1 cut(s) 449
BspACI CCGC 9 cut(s) 80, 88, 618, 771, 946, 1187, 2060, 2351, 2413
BspANI GGCC 3 cut(s) 290, 770, 1235
BspCNI CTCAG 4 cut(s) 289, 462, 967, 1060
BspHI TCATGA 2 cut(s) 1296, 1642
BspLI GGNNCC 4 cut(s) 1577, 1854, 1891, 2136
BspMAI CTGCAG 3 cut(s) 78, 1081, 2220
BspMI ACCTGC 2 cut(s) 400, 1840
BspPI GGATC 4 cut(s) 1696, 1808, 2129, 2142
BspT107I GGYRCC 1 cut(s) 1575
BspTI CTTAAG 1 cut(s) 1418
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 5 cut(s) 51, 1170, 1790, 2342, 2463
BsrGI TGTACA 1 cut(s) 1060
BsrI ACTGG 3 cut(s) 649, 1132, 2266
BssECI CCNNGG 2 cut(s) 477, 1230
BssMI GATC 3 cut(s) 1688, 1813, 2134
BssNI GRCGYC 1 cut(s) 130
Bst2UI CCWGG 3 cut(s) 724, 1818, 2124
Bst4CI ACNGT 6 cut(s) 32, 707, 1447, 1836, 2130, 2310
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 130
BstAFI CTTAAG 1 cut(s) 1418
BstAPI GCANNNNNTGC 9 cut(s) 50, 678, 1015, 1076, 1183, 2074, 2119, 2341, 2416
BstAUI TGTACA 1 cut(s) 1060
BstC8I GCNNGC 7 cut(s) 42, 78, 415, 540, 544, 1727, 1947
BstDEI CTNAG 6 cut(s) 276, 449, 954, 1047, 1322, 1386
BstDSI CCRYGG 1 cut(s) 1230
BstF5I GGATG 2 cut(s) 55, 2346
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 3 cut(s) 1691, 1816, 2137
BstMAI GTCTC 3 cut(s) 260, 279, 1298
BstMBI GATC 3 cut(s) 1688, 1813, 2134
BstNI CCWGG 3 cut(s) 724, 1818, 2124
BstNSI RCATGY 1 cut(s) 1942
BstSCI CCNGG 4 cut(s) 477, 722, 1816, 2122
BstSFI CTRYAG 7 cut(s) 74, 233, 1077, 1096, 2216, 2321, 2393
BstSLI GKGCMC 1 cut(s) 1578
BstV2I GAAGAC 3 cut(s) 125, 312, 1737
BstX2I RGATCY 3 cut(s) 1688, 1813, 2134
BstYI RGATCY 3 cut(s) 1688, 1813, 2134
BsuI GTATCC 3 cut(s) 109, 957, 2322
BsuRI GGCC 3 cut(s) 290, 770, 1235
BtgI CCRYGG 1 cut(s) 1230
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 55, 2346
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 6 cut(s) 1086, 1452, 1832, 1891, 2161, 2273
BveI ACCTGC 2 cut(s) 400, 1840
Cac8I GCNNGC 7 cut(s) 42, 78, 415, 540, 544, 1727, 1947
CaiI CAGNNNCTG 3 cut(s) 2116, 2119, 2416
CciI TCATGA 2 cut(s) 1296, 1642
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 1234, 1852, 1889
CseI GACGC 2 cut(s) 119, 650
Csp6I GTAC 3 cut(s) 464, 1061, 1837
CviQI GTAC 3 cut(s) 464, 1061, 1837
DdeI CTNAG 6 cut(s) 276, 449, 954, 1047, 1322, 1386
DpnI GATC 3 cut(s) 1690, 1815, 2136
DpnII GATC 3 cut(s) 1688, 1813, 2134
DraIII CACNNNGTG 2 cut(s) 1928, 2201
EaeI YGGCCR 2 cut(s) 288, 768
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 1 cut(s) 1997
Eco47I GGWCC 2 cut(s) 1852, 1889
Eco57I CTGAAG 7 cut(s) 269, 795, 853, 1088, 1136, 1340, 1949
EcoO109I RGGNCCY 1 cut(s) 1852
EcoRII CCWGG 3 cut(s) 722, 1816, 2122
EcoRV GATATC 1 cut(s) 1997
EcoT22I ATGCAT 1 cut(s) 766
EcoT38I GRGCYC 1 cut(s) 450
FalI AAGNNNNNCTT 2 cut(s) 1898, 1930
FaqI GGGAC 4 cut(s) 1644, 1838, 1875, 2022
FauNDI CATATG 1 cut(s) 1653
FokI GGATG 2 cut(s) 62, 2353
FriOI GRGCYC 1 cut(s) 450
FspBI CTAG 4 cut(s) 467, 588, 623, 687
GlaI GCGC 1 cut(s) 510
GsaI CCCAGC 2 cut(s) 318, 2143
GsuI CTGGAG 2 cut(s) 417, 1451
HaeIII GGCC 3 cut(s) 290, 770, 1235
HapII CCGG 2 cut(s) 144, 479
HgaI GACGC 2 cut(s) 119, 650
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 130
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 2 cut(s) 1137, 1212
HindII GTYRAC 2 cut(s) 1137, 1212
HindIII AAGCTT 1 cut(s) 1550
HpaI GTTAAC 1 cut(s) 1212
HpaII CCGG 2 cut(s) 144, 479
HphI GGTGA 4 cut(s) 334, 1467, 1578, 2138
Hpy166II GTNNAC 4 cut(s) 580, 1137, 1212, 2296
Hpy8I GTNNAC 4 cut(s) 580, 1137, 1212, 2296
HpyAV CCTTC 7 cut(s) 573, 631, 655, 877, 1294, 1593, 1973
HpyCH4III ACNGT 6 cut(s) 32, 707, 1447, 1836, 2130, 2310
HpyCH4IV ACGT 3 cut(s) 491, 576, 1716
HpyF3I CTNAG 6 cut(s) 276, 449, 954, 1047, 1322, 1386
HpySE526I ACGT 3 cut(s) 491, 576, 1716
Hsp92I GRCGYC 1 cut(s) 130
HspAI GCGC 1 cut(s) 509
KspAI GTTAAC 1 cut(s) 1212
Kzo9I GATC 3 cut(s) 1688, 1813, 2134
LmnI GCTCC 4 cut(s) 475, 1256, 1432, 2065
MaeI CTAG 4 cut(s) 467, 588, 623, 687
MaeII ACGT 3 cut(s) 491, 576, 1716
MaeIII GTNAC 7 cut(s) 340, 380, 558, 701, 1449, 1466, 1717
MalI GATC 3 cut(s) 1690, 1815, 2136
MboI GATC 3 cut(s) 1688, 1813, 2134
MfeI CAATTG 1 cut(s) 2015
MflI RGATCY 3 cut(s) 1688, 1813, 2134
MhlI GDGCHC 4 cut(s) 450, 1437, 1578, 1611
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 3 cut(s) 28, 836, 1666
MmeI TCCRAC 5 cut(s) 330, 819, 1015, 1830, 2112
Mox20I TGGCCA 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 766
MroXI GAANNNNTTC 2 cut(s) 606, 1089
MscI TGGCCA 1 cut(s) 290
MseI TTAA 8 cut(s) 819, 1211, 1419, 1530, 1935, 1956, 2163, 2497
MslI CAYNNNNRTG 2 cut(s) 1445, 2174
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 4 cut(s) 773, 946, 2116, 2413
MspCI CTTAAG 1 cut(s) 1418
MspI CCGG 2 cut(s) 144, 479
MspR9I CCNGG 4 cut(s) 479, 724, 1818, 2124
MunI CAATTG 1 cut(s) 2015
Mva1269I GAATGC 2 cut(s) 1669, 1915
MvaI CCWGG 3 cut(s) 724, 1818, 2124
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 1653
NdeII GATC 3 cut(s) 1688, 1813, 2134
NlaIV GGNNCC 4 cut(s) 1577, 1854, 1891, 2136
NmuCI GTSAC 3 cut(s) 340, 701, 1717
NsiI ATGCAT 1 cut(s) 766
NspI RCATGY 1 cut(s) 1942
PagI TCATGA 2 cut(s) 1296, 1642
PaqCI CACCTGC 1 cut(s) 400
PctI GAATGC 2 cut(s) 1669, 1915
PdmI GAANNNNTTC 2 cut(s) 606, 1089
PfeI GAWTC 9 cut(s) 1085, 1111, 1226, 1240, 1367, 1556, 1786, 2179, 2231
PflFI GACNNNGTC 2 cut(s) 271, 644
PflMI CCANNNNNTGG 1 cut(s) 395
PfoI TCCNGGA 2 cut(s) 722, 1816
PleI GAGTC 3 cut(s) 27, 836, 1665
PpsI GAGTC 3 cut(s) 27, 836, 1665
PpuMI RGGWCCY 1 cut(s) 1852
PshBI ATTAAT 3 cut(s) 819, 1530, 1956
Psp5II RGGWCCY 1 cut(s) 1852
Psp6I CCWGG 3 cut(s) 722, 1816, 2122
PspFI CCCAGC 2 cut(s) 314, 2139
PspGI CCWGG 3 cut(s) 722, 1816, 2122
PspN4I GGNNCC 4 cut(s) 1577, 1854, 1891, 2136
PspPI GGNCC 3 cut(s) 1234, 1852, 1889
PspPPI RGGWCCY 1 cut(s) 1852
PstI CTGCAG 3 cut(s) 78, 1081, 2220
PstNI CAGNNNCTG 3 cut(s) 2116, 2119, 2416
PsuI RGATCY 3 cut(s) 1688, 1813, 2134
PsyI GACNNNGTC 2 cut(s) 271, 644
PvuII CAGCTG 1 cut(s) 2116
RsaI GTAC 3 cut(s) 465, 1062, 1838
RsaNI GTAC 3 cut(s) 464, 1061, 1837
RseI CAYNNNNRTG 2 cut(s) 1445, 2174
SaqAI TTAA 8 cut(s) 819, 1211, 1419, 1530, 1935, 1956, 2163, 2497
Sau3AI GATC 3 cut(s) 1688, 1813, 2134
Sau96I GGNCC 3 cut(s) 1234, 1852, 1889
SchI GAGTC 3 cut(s) 28, 836, 1666
ScrFI CCNGG 4 cut(s) 479, 724, 1818, 2124
SduI GDGCHC 4 cut(s) 450, 1437, 1578, 1611
SfcI CTRYAG 7 cut(s) 74, 233, 1077, 1096, 2216, 2321, 2393
SinI GGWCC 2 cut(s) 1852, 1889
SmiMI CAYNNNNRTG 2 cut(s) 1445, 2174
SmlI CTYRAG 6 cut(s) 167, 336, 1400, 1418, 1629, 2237
SmoI CTYRAG 6 cut(s) 167, 336, 1400, 1418, 1629, 2237
SsiI CCGC 9 cut(s) 80, 88, 618, 771, 946, 1187, 2060, 2351, 2413
SspI AATATT 2 cut(s) 823, 1182
SspMI CTAG 4 cut(s) 467, 588, 623, 687
StyD4I CCNGG 4 cut(s) 477, 722, 1816, 2122
TaaI ACNGT 6 cut(s) 32, 707, 1447, 1836, 2130, 2310
TaiI ACGT 3 cut(s) 494, 579, 1719
TaqI TCGA 5 cut(s) 189, 632, 1365, 1673, 2034
TatI WGTACW 3 cut(s) 463, 1060, 1836
TauI GCSGC 5 cut(s) 91, 773, 1189, 2062, 2416
TfiI GAWTC 9 cut(s) 1085, 1111, 1226, 1240, 1367, 1556, 1786, 2179, 2231
Tru1I TTAA 8 cut(s) 819, 1211, 1419, 1530, 1935, 1956, 2163, 2497
Tru9I TTAA 8 cut(s) 819, 1211, 1419, 1530, 1935, 1956, 2163, 2497
TscAI CASTG 6 cut(s) 1086, 1452, 1839, 1891, 2161, 2273
TseFI GTSAC 3 cut(s) 340, 701, 1717
Tsp45I GTSAC 3 cut(s) 340, 701, 1717
TspGWI ACGGA 1 cut(s) 976
TspRI CASTG 6 cut(s) 1086, 1452, 1839, 1891, 2161, 2273
Tth111I GACNNNGTC 2 cut(s) 271, 644
Van91I CCANNNNNTGG 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 1418
VpaK11BI GGWCC 2 cut(s) 1852, 1889
VspI ATTAAT 3 cut(s) 819, 1530, 1956
XapI RAATTY 4 cut(s) 240, 406, 1972, 2245
XceI RCATGY 1 cut(s) 1942
XmnI GAANNNNTTC 2 cut(s) 606, 1089
XspI CTAG 4 cut(s) 467, 588, 623, 687
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.