Rh5CG544600

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000315
Physical Location & Seq
Forward (+)
76030912 .. 76033410
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG544600.1

Sequence Viewer

Length: 1590 bp
ATGGATAACAACAATGGCATTCCTCCTCAAGATGGACGGCCCTCAATGGAAGCAGGAGATTGGAGGAGCAGAATGCCCACGGATATGCGGCAAAGACTTATCAACAGGATAATGTCTACATTGAAGGCGCATCGCCCCATTTCTCGTCAAGAGGGATTAGATGAACTCGAGGAAAATGCTGTAAGTTTGGAGGAAAAGATTTATGCTGCTGCCACTAGCCAGTTGGACTATCTCTGGAAAATTTCTCAGGAGATGCTCACAGTTGTGACCAAGCCACAGAATACAACATCCAATCCTCAAGAATCCAATGGCAAGGGACCTCTCGATTCAGTTGCTGATCAAGGACAATCAATCTCAATGTCATTGCCAGCCAATCAGTCCCAAACAAGGCAACATTTCGTACCACAGAACATACAGAATAACATTCTGCCTGCTGGAGTTCAAAGTTATACTGGGTTGTCATCTGGACTTTCTCCTACCATAAACTATCAAACAAGGGAACAATTTGTACCGCAAAATATTCAGAATAGCATTCTGACTGCTGGAGTTCAAAGTTCTGTTGGCTTATCATCTGCACTATCTCCTACCGGAAACTATCATCCATATTGCCTCCAACCCCCTGCCCCTGGTCAAAATATTCCCGGCTTATCATATGCACTGCCTCCTCCACAGGGTCTGAATATGTCTGCACTAGTTGCCTCTATTCCGTCTGGCTTTTCTTCTGCTCCAGCATCTATTATGCGACCTTCCACACTGCAGTCATCTCTCCCTAGGCTTCAGCAGAATCAACAATCAACTATTCCCCACTCTTCACAATCCATGCTTCAGCAAACAGCAGTGCCACAACAGCAAATGTTGCCCCAACAGCTTCAACAGCAACAGTTAGCAGGGTCTTCAACAGCTCAGCAGAACAAGAAGACTCCATCGCAGACGATTGGAGAGCTGTTAGCCACAATAAAGAACTCACAGCAGCAGGTCCCTATGGGCTCTATTCAACAGACTCCGGTCAGTGCTCCCCAGCAAGCTAACATGAATGTACAGAGTGGGATTAACACATTGCACCCAAACGTTATTCCACTCGATATTCTTCAGAACCAACAACAATATCAGAATCAACTTCAGCAACAATATCAAATCCAGCTACTACATCAACAGCGTCAACAGCTGCAGTTGATGCAGATGCAGCAGATAAATCAACAACTGCAACAGCAGCTGGCTAGACAGTCGCAGACACACCAAATGCCACAGCTTCACCAAATCAGAGTTGTTGACGCGAACATGAATGCCTCGTCATCACAGAGTGGGAGTAATATGCTGCAGGCAAACATTGTTTCTCCTCTGCCAAACTCTGGTATTGTTGATAACCAGCATCTGAAGCAAGAACAGGAGCAGAAAATGTTTAAGCATCAACCCCAGCAACCATATCAACAGCTACAGATGCAGAAGCCGCAGATGCTTCAAGAAAAGCAACAGCAAAAGATACAGCAACTAGAGCAACAAGCAAAGCAGCAGCTGTGTCATATTTATTTCATTTATCTCATCTTTCTCACCATTCTGATGGGTGCTCTAATCTTCGGGATAGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

529

Amino Acids

58.97

Weight (kDa)

8.93

Isoelectric Point (pI)

77.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 98 1.3e-21 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 964
AccB7I CCANNNNNTGG 1 cut(s) 1349
AccI GTMKAC 1 cut(s) 116
AccII CGCG 1 cut(s) 1274
AciI CCGC 3 cut(s) 88, 512, 1448
AclI AACGTT 1 cut(s) 1068
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 5 cut(s) 761, 809, 1073, 1103, 1394
AdeI CACNNNGTG 1 cut(s) 1301
AfaI GTAC 3 cut(s) 402, 510, 1038
AfiI CCNNNNNNNGG 5 cut(s) 32, 387, 626, 671, 1349
AgsI TTSAA 7 cut(s) 124, 443, 551, 872, 897, 995, 1460
AhlI ACTAGT 1 cut(s) 691
AjnI CCWGG 1 cut(s) 625
AleI CACNNNNGTG 1 cut(s) 263
Alw21I GWGCWC 2 cut(s) 1015, 1567
AlwNI CAGNNNCTG 5 cut(s) 335, 676, 1213, 1372, 1513
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 38, 1582
ApeKI GCWGC 9 cut(s) 206, 209, 970, 1165, 1183, 1210, 1315, 1507, 1510
ApoI RAATTY 1 cut(s) 240
AspA2I CCTAGG 1 cut(s) 770
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 39, 317, 976
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 2 cut(s) 1244, 1540
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 317, 976
AvrII CCTAGG 1 cut(s) 770
BanII GRGCYC 1 cut(s) 989
BbsI GAAGAC 2 cut(s) 885, 923
Bbv12I GWGCWC 2 cut(s) 1015, 1567
BbvI GCAGC 9 cut(s) 193, 196, 982, 1152, 1195, 1222, 1302, 1519, 1522
BccI CCATC 3 cut(s) 26, 931, 1552
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 4 cut(s) 158, 192, 314, 348
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 642
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 5 cut(s) 216, 692, 771, 1218, 1490
BfmI CTRYAG 4 cut(s) 755, 1166, 1316, 1433
BfuAI ACCTGC 1 cut(s) 964
BlnI CCTAGG 1 cut(s) 770
BlpI GCTNAGC 1 cut(s) 903
Bme1390I CCNGG 2 cut(s) 627, 642
Bme18I GGWCC 2 cut(s) 317, 976
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 39, 317, 976
BmiI GGNNCC 2 cut(s) 318, 978
BmrFI CCNGG 2 cut(s) 627, 642
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 9 cut(s) 139, 243, 740, 1164, 1170, 1378, 1414, 1428, 1443
BmuI ACTGGG 1 cut(s) 462
BoxI GACNNNNGTC 1 cut(s) 1004
BpiI GAAGAC 2 cut(s) 885, 923
BpmI CTGGAG 3 cut(s) 456, 564, 711
Bpu1102I GCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 12, 282
BpuMI CCSGG 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 78, 625, 770
BsaWI WCCGGW 2 cut(s) 587, 1003
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 387, 626, 671, 1349
Bse1I ACTGG 2 cut(s) 220, 457
Bse3DI GCAATG 2 cut(s) 362, 1055
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 78, 625, 770
BseGI GGATG 2 cut(s) 287, 598
BseLI CCNNNNNNNGG 5 cut(s) 32, 387, 626, 671, 1349
BseMI GCAATG 2 cut(s) 362, 1055
BseMII CTCAG 2 cut(s) 260, 917
BseNI ACTGG 2 cut(s) 220, 457
BseRI GAGGAG 4 cut(s) 15, 79, 654, 1326
BseXI GCAGC 9 cut(s) 193, 196, 982, 1152, 1195, 1222, 1302, 1519, 1522
BseYI CCCAGC 2 cut(s) 1017, 1413
BsgI GTGCAG 2 cut(s) 558, 672
Bsh1236I CGCG 1 cut(s) 1274
BshFI GGCC 2 cut(s) 40, 1584
BsiHKAI GWGCWC 2 cut(s) 1015, 1567
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 3 cut(s) 588, 642, 1004
BslFI GGGAC 3 cut(s) 330, 364, 962
BslI CCNNNNNNNGG 5 cut(s) 32, 387, 626, 671, 1349
BsmFI GGGAC 3 cut(s) 330, 364, 962
BsmI GAATGC 4 cut(s) 18, 78, 531, 1288
BsnI GGCC 2 cut(s) 40, 1584
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 989, 1015, 1567
Bsp1407I TGTACA 1 cut(s) 1036
Bsp143I GATC 1 cut(s) 337
Bsp1720I GCTNAGC 1 cut(s) 903
BspACI CCGC 3 cut(s) 88, 512, 1448
BspANI GGCC 2 cut(s) 40, 1584
BspCNI CTCAG 2 cut(s) 259, 916
BspFNI CGCG 1 cut(s) 1274
BspLI GGNNCC 2 cut(s) 318, 978
BspMAI CTGCAG 3 cut(s) 759, 1170, 1320
BspMI ACCTGC 1 cut(s) 964
BsrDI GCAATG 2 cut(s) 362, 1055
BsrGI TGTACA 1 cut(s) 1036
BsrI ACTGG 2 cut(s) 220, 457
BssECI CCNNGG 3 cut(s) 78, 625, 770
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 770
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 262, 882, 1224
Bst6I CTCTTC 1 cut(s) 814
BstAPI GCANNNNNTGC 3 cut(s) 695, 856, 1174
BstAUI TGTACA 1 cut(s) 1036
BstC8I GCNNGC 5 cut(s) 369, 432, 1023, 1215, 1320
BstDEI CTNAG 2 cut(s) 246, 903
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 287, 598
BstFNI CGCG 1 cut(s) 1274
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 627
BstPAI GACNNNNGTC 1 cut(s) 1004
BstSCI CCNGG 2 cut(s) 625, 640
BstSFI CTRYAG 4 cut(s) 755, 1166, 1316, 1433
BstUI CGCG 1 cut(s) 1274
BstV1I GCAGC 9 cut(s) 193, 196, 982, 1152, 1195, 1222, 1302, 1519, 1522
BstV2I GAAGAC 2 cut(s) 885, 923
BstXI CCANNNNNNTGG 1 cut(s) 1558
BsuRI GGCC 2 cut(s) 40, 1584
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 2 cut(s) 116, 909
BtsCI GGATG 2 cut(s) 287, 598
BtsI GCAGTG 3 cut(s) 656, 752, 843
BtsIMutI CAGTG 4 cut(s) 656, 752, 843, 1015
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 5 cut(s) 369, 432, 1023, 1215, 1320
CaiI CAGNNNCTG 5 cut(s) 335, 676, 1213, 1372, 1513
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 39, 317, 976
CseI GACGC 2 cut(s) 1145, 1280
Csp6I GTAC 3 cut(s) 401, 509, 1037
CviAII CATG 3 cut(s) 820, 1030, 1279
CviQI GTAC 3 cut(s) 401, 509, 1037
DdeI CTNAG 2 cut(s) 246, 903
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DraIII CACNNNGTG 1 cut(s) 1301
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 770
Eco24I GRGCYC 1 cut(s) 989
Eco47I GGWCC 2 cut(s) 317, 976
Eco57I CTGAAG 5 cut(s) 761, 809, 1073, 1103, 1394
Eco88I CYCGRG 1 cut(s) 167
EcoO109I RGGNCCY 2 cut(s) 317, 976
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 770
EcoT38I GRGCYC 1 cut(s) 989
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 3 cut(s) 823, 1033, 1282
FaqI GGGAC 3 cut(s) 330, 364, 962
FatI CATG 3 cut(s) 819, 1029, 1278
FauNDI CATATG 1 cut(s) 652
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 116
FokI GGATG 2 cut(s) 274, 585
FriOI GRGCYC 1 cut(s) 989
FspBI CTAG 5 cut(s) 216, 692, 771, 1218, 1490
GlaI GCGC 1 cut(s) 129
GsaI CCCAGC 2 cut(s) 1021, 1417
GsuI CTGGAG 3 cut(s) 456, 564, 711
HaeIII GGCC 2 cut(s) 40, 1584
HapII CCGG 3 cut(s) 588, 642, 1004
HgaI GACGC 2 cut(s) 1145, 1280
HhaI GCGC 1 cut(s) 130
Hin1II CATG 3 cut(s) 823, 1033, 1282
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 2 cut(s) 1160, 1270
HindII GTYRAC 2 cut(s) 1160, 1270
HinfI GANTC 6 cut(s) 302, 326, 784, 919, 1000, 1111
HpaII CCGG 3 cut(s) 588, 642, 1004
HphI GGTGA 2 cut(s) 1244, 1540
Hpy166II GTNNAC 3 cut(s) 117, 1160, 1270
Hpy188I TCNGA 8 cut(s) 525, 537, 678, 1092, 1110, 1262, 1374, 1557
Hpy188III TCNNGA 9 cut(s) 29, 149, 235, 248, 299, 323, 465, 1460, 1576
Hpy8I GTNNAC 3 cut(s) 117, 1160, 1270
HpyAV CCTTC 2 cut(s) 118, 756
HpyCH4III ACNGT 3 cut(s) 262, 882, 1224
HpyCH4IV ACGT 1 cut(s) 1068
HpyF3I CTNAG 2 cut(s) 246, 903
HpySE526I ACGT 1 cut(s) 1068
Hsp92II CATG 3 cut(s) 823, 1033, 1282
HspAI GCGC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 4 cut(s) 66, 730, 1018, 1387
Lsp1109I GCAGC 9 cut(s) 193, 196, 982, 1152, 1195, 1222, 1302, 1519, 1522
LweI GCATC 9 cut(s) 139, 243, 740, 1164, 1170, 1378, 1414, 1428, 1443
MaeI CTAG 5 cut(s) 216, 692, 771, 1218, 1490
MaeII ACGT 1 cut(s) 1068
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 6 cut(s) 711, 801, 885, 928, 1079, 1564
MhlI GDGCHC 3 cut(s) 989, 1015, 1567
MluCI AATT 2 cut(s) 240, 503
MlyI GAGTC 2 cut(s) 913, 994
MmeI TCCRAC 2 cut(s) 204, 637
MseI TTAA 2 cut(s) 1050, 1401
MslI CAYNNNNRTG 3 cut(s) 83, 263, 1556
MspA1I CMGCKG 3 cut(s) 1165, 1213, 1513
MspI CCGG 3 cut(s) 588, 642, 1004
MspR9I CCNGG 2 cut(s) 627, 642
Mva1269I GAATGC 4 cut(s) 18, 78, 531, 1288
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 1274
NciI CCSGG 1 cut(s) 642
NdeI CATATG 1 cut(s) 652
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 823, 1033, 1282
NlaIV GGNNCC 2 cut(s) 318, 978
NmuCI GTSAC 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 167
PctI GAATGC 4 cut(s) 18, 78, 531, 1288
PfeI GAWTC 4 cut(s) 302, 326, 784, 1111
PflMI CCANNNNNTGG 1 cut(s) 1349
PleI GAGTC 2 cut(s) 913, 994
PpsI GAGTC 2 cut(s) 913, 994
PpuMI RGGWCCY 2 cut(s) 317, 976
PshAI GACNNNNGTC 1 cut(s) 1004
Psp1406I AACGTT 1 cut(s) 1068
Psp5II RGGWCCY 2 cut(s) 317, 976
Psp6I CCWGG 1 cut(s) 625
PspFI CCCAGC 2 cut(s) 1017, 1413
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 318, 978
PspPI GGNCC 3 cut(s) 39, 317, 976
PspPPI RGGWCCY 2 cut(s) 317, 976
PspXI VCTCGAGB 1 cut(s) 167
PsrI GAACNNNNNNTAC 2 cut(s) 492, 524
PstI CTGCAG 3 cut(s) 759, 1170, 1320
PstNI CAGNNNCTG 5 cut(s) 335, 676, 1213, 1372, 1513
PvuII CAGCTG 3 cut(s) 1165, 1213, 1513
RsaI GTAC 3 cut(s) 402, 510, 1038
RsaNI GTAC 3 cut(s) 401, 509, 1037
RseI CAYNNNNRTG 3 cut(s) 83, 263, 1556
SaqAI TTAA 2 cut(s) 1050, 1401
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 3 cut(s) 39, 317, 976
SchI GAGTC 2 cut(s) 913, 994
ScrFI CCNGG 2 cut(s) 627, 642
SduI GDGCHC 3 cut(s) 989, 1015, 1567
SfaNI GCATC 9 cut(s) 139, 243, 740, 1164, 1170, 1378, 1414, 1428, 1443
SfcI CTRYAG 4 cut(s) 755, 1166, 1316, 1433
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 317, 976
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 3 cut(s) 83, 263, 1556
SmlI CTYRAG 3 cut(s) 27, 167, 297
SmoI CTYRAG 3 cut(s) 27, 167, 297
SpeI ACTAGT 1 cut(s) 691
Sse9I AATT 2 cut(s) 240, 503
SsiI CCGC 3 cut(s) 88, 512, 1448
SspI AATATT 2 cut(s) 520, 637
SspMI CTAG 5 cut(s) 216, 692, 771, 1218, 1490
StyD4I CCNGG 2 cut(s) 625, 640
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 3 cut(s) 262, 882, 1224
TaiI ACGT 1 cut(s) 1071
TaqI TCGA 3 cut(s) 168, 324, 1080
TasI AATT 2 cut(s) 240, 503
TatI WGTACW 1 cut(s) 1036
TauI GCSGC 2 cut(s) 91, 1450
TfiI GAWTC 4 cut(s) 302, 326, 784, 1111
Tru1I TTAA 2 cut(s) 1050, 1401
Tru9I TTAA 2 cut(s) 1050, 1401
TscAI CASTG 4 cut(s) 663, 759, 843, 1015
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 9 cut(s) 206, 209, 970, 1165, 1183, 1210, 1315, 1507, 1510
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 177, 1046, 1295, 1519
TspGWI ACGGA 2 cut(s) 95, 696
TspRI CASTG 4 cut(s) 663, 759, 843, 1015
Van91I CCANNNNNTGG 1 cut(s) 1349
VpaK11BI GGWCC 2 cut(s) 317, 976
XapI RAATTY 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 5 cut(s) 216, 692, 771, 1218, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.