Rh5DG533700

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000315
Physical Location & Seq
Forward (+)
82218900 .. 82219391
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG533700.1

Sequence Viewer

Length: 492 bp
ATGTCAGATCAGCTTGAGAAGCTAAAGATGTTTAAGACCATGCTGGAGCGCCTGATAACAGTCTTACAAATTTCCAAAACTAACATATCACCTGGTTTGAAGGAGAAGTTGGATTTATACGAGAAGCAGATAATAAATTTTATTAATACAAATAGACCCAGGAATGCCAGGATTACTCAAGTGCAATCTCATGAAAATCAGATGATCCTACAATTGCAATCCCTGAACTTGCAAGGTTCCGTGCCAACAATGCAGCAGAACAATATGACGGGCTTGCAGCAAAATTCTATGTCTTCTTTATCTGGGGTTTCAACAGCACAGCAAAACATGATGAATCCATTGCAGCTAAGTTCCAATATTTATCCAGGACAAGGAACCGCACTGAACTCACTGCAGCAGGTTCCTGTGGGCTCTATCCAACAAGCTCCTGTCAGTGCTCCCCAACAAGTTAACATGAATGCCTTACCATCACAGAATGGGATTAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

163

Amino Acids

18.08

Weight (kDa)

9.7

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 3 cut(s) 69, 136, 283
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 100, 312
AjnI CCWGG 4 cut(s) 91, 158, 167, 364
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 13, 22, 346, 425
AluI AGCT 4 cut(s) 13, 22, 346, 425
Alw21I GWGCWC 1 cut(s) 439
AlwI GGATC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 253, 277, 343, 394
ApoI RAATTY 3 cut(s) 69, 136, 283
AseI ATTAAT 1 cut(s) 144
AspLEI GCGC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 81
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 4 cut(s) 265, 289, 355, 406
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 4 cut(s) 93, 160, 169, 366
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 52
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 4 cut(s) 254, 278, 344, 395
BlsI GCNGC 4 cut(s) 255, 279, 345, 396
Bme1390I CCNGG 4 cut(s) 93, 160, 169, 366
BmiI GGNNCC 3 cut(s) 238, 376, 402
BmrFI CCNGG 4 cut(s) 93, 160, 169, 366
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 35, 162
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 338
BseBI CCWGG 4 cut(s) 93, 160, 169, 366
BseDI CCNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 338
BseXI GCAGC 4 cut(s) 265, 289, 355, 406
BsiHKAI GWGCWC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 371
BsmI GAATGC 2 cut(s) 169, 463
Bsp1286I GDGCHC 2 cut(s) 413, 439
Bsp143I GATC 2 cut(s) 7, 204
BspACI CCGC 1 cut(s) 378
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 238, 376, 402
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 2 cut(s) 7, 204
Bst2UI CCWGG 4 cut(s) 93, 160, 169, 366
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 10, 207
BstMBI GATC 2 cut(s) 7, 204
BstMWI GCNNNNNNNGC 2 cut(s) 19, 250
BstNI CCWGG 4 cut(s) 93, 160, 169, 366
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 4 cut(s) 91, 158, 167, 364
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 265, 289, 355, 406
BstV2I GAAGAC 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 3 cut(s) 380, 389, 439
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 275
CciI TCATGA 1 cut(s) 190
CfoI GCGC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 91
CviAII CATG 5 cut(s) 40, 191, 328, 454, 487
CviJI RGCY 6 cut(s) 13, 22, 273, 346, 411, 425
CviKI_1 RGCY 6 cut(s) 13, 22, 273, 346, 411, 425
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 9, 206
DpnII GATC 2 cut(s) 7, 204
Eco24I GRGCYC 1 cut(s) 413
EcoRII CCWGG 4 cut(s) 91, 158, 167, 364
EcoT38I GRGCYC 1 cut(s) 413
FaeI CATG 5 cut(s) 43, 194, 331, 457, 490
FaiI YATR 9 cut(s) 41, 86, 118, 192, 266, 290, 329, 455, 488
FatI CATG 5 cut(s) 39, 190, 327, 453, 486
Fnu4HI GCNGC 4 cut(s) 254, 278, 344, 395
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 4 cut(s) 254, 278, 344, 395
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 254, 278, 344, 395
GsuI CTGGAG 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 52
HhaI GCGC 1 cut(s) 51
Hin1II CATG 5 cut(s) 43, 194, 331, 457, 490
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 1 cut(s) 334
HpaI GTTAAC 1 cut(s) 451
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 7, 201
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 7 cut(s) 184, 217, 232, 253, 277, 343, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 250
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 5 cut(s) 43, 194, 331, 457, 490
HspAI GCGC 1 cut(s) 49
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 2 cut(s) 7, 204
LmnI GCTCC 3 cut(s) 46, 430, 442
Lsp1109I GCAGC 4 cut(s) 265, 289, 355, 406
MabI ACCWGGT 1 cut(s) 91
MalI GATC 2 cut(s) 9, 206
MboI GATC 2 cut(s) 7, 204
MboII GAAGA 1 cut(s) 285
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 413, 439
MluCI AATT 4 cut(s) 69, 136, 212, 283
MmeI TCCRAC 2 cut(s) 90, 442
MseI TTAA 4 cut(s) 33, 144, 450, 483
MspR9I CCNGG 4 cut(s) 93, 160, 169, 366
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 2 cut(s) 169, 463
MvaI CCWGG 4 cut(s) 93, 160, 169, 366
MwoI GCNNNNNNNGC 2 cut(s) 19, 250
NdeII GATC 2 cut(s) 7, 204
NlaIII CATG 5 cut(s) 43, 194, 331, 457, 490
NlaIV GGNNCC 3 cut(s) 238, 376, 402
NspI RCATGY 1 cut(s) 490
PagI TCATGA 1 cut(s) 190
PciI ACATGT 1 cut(s) 486
PctI GAATGC 2 cut(s) 169, 463
PfeI GAWTC 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 4 cut(s) 255, 279, 345, 396
PscI ACATGT 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 144
Psp6I CCWGG 4 cut(s) 91, 158, 167, 364
PspGI CCWGG 4 cut(s) 91, 158, 167, 364
PspN4I GGNNCC 3 cut(s) 238, 376, 402
PstI CTGCAG 1 cut(s) 396
SaqAI TTAA 4 cut(s) 33, 144, 450, 483
SatI GCNGC 4 cut(s) 254, 278, 344, 395
Sau3AI GATC 2 cut(s) 7, 204
ScrFI CCNGG 4 cut(s) 93, 160, 169, 366
SduI GDGCHC 2 cut(s) 413, 439
SetI ASST 7 cut(s) 15, 24, 94, 238, 348, 402, 427
SexAI ACCWGGT 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 14, 177
SmoI CTYRAG 2 cut(s) 14, 177
Sse9I AATT 4 cut(s) 69, 136, 212, 283
SsiI CCGC 1 cut(s) 378
SspI AATATT 1 cut(s) 358
StyD4I CCNGG 4 cut(s) 91, 158, 167, 364
TaaI ACNGT 1 cut(s) 61
TasI AATT 4 cut(s) 69, 136, 212, 283
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 4 cut(s) 33, 144, 450, 483
Tru9I TTAA 4 cut(s) 33, 144, 450, 483
TscAI CASTG 3 cut(s) 387, 396, 439
TseI GCWGC 4 cut(s) 253, 277, 343, 394
TspDTI ATGAA 3 cut(s) 207, 347, 470
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 3 cut(s) 387, 396, 439
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 3 cut(s) 69, 136, 283
XceI RCATGY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.