Rh5DG533400

Mediator of RNA polymerase II transcription subunit 15a-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
82206455 .. 82211761
5307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG533400.1

Sequence Viewer

Length: 2406 bp
ATGTTCATGGATAACAACGATGGGAGTCCTCCTAACGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGAACAAACTGCAGGCGGATTCGCGGCAAAGAATTGTCAATAAGATAATGGATACATTGAAGAGGCATCTTCCTTTCTCCGGTCAAGAGGGATTGCATGAGCTCAAGAAAATTGCTGTTAGGTTCGAGGAAAAGATTTATACTGCTGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTGAAGATGCTCACTATGGAGACCAAGTCTCAGACCAAAATGGCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATGCAACCTCATGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCACCTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTACCCCCTACCTCTGGGCTCAGCTTATCATCTGACGTGAACATTTCTAGTTCATCATTTGAACTATTTCCTATCTGCGGTCTAGTTCCCTCGAAGAAGTACGCAGTCCAGTCAGATTGGAAGGCTCATAGCAAGATTTGCGGGGCTAGTGAGTATAGATGTGACTGTGGCACACTCTTTTCCAGGAATGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCATTGGCGGCTGAAGAAAGTGCAAGGTTTGGTTCAACTTCAACAGCCACCAACATTAATATTCCGAGCTTCATGTCGGACTCATCTTCCGCTTTACCTCCTGCCTTCAGTCTAGACTTATTGACTAATTGTCATAGGCAAATGCAAGGACAGCAACAGGTAGTTCCTCAACAGCAACAGCAGCAATCAGAGTATTCACAGCAGCGGATTTCTCAGCAACAGATACAACAAGAACTTATTCGAAATATCCAACAGCAACAAGAGCAGCAGCAGATGCTATTACAAAAAACACCATTGTCATCTTCTCAGCAATCTCATGTACAATCAGCATCTTCTGCAGTGGAATCTTTTCTCTGTAGGCTTCAGCAGAATCAACAATTAGCTATTTCCCAGTTGACACAACCCATGCTTCAGCAAACAGCAATGCCACAACAGCAAATATTTCCGCCACAGCATCAACAGCAACAGTTAACAGCATCTCTGGATTCCACGGCCCAGATTCAAGATAAAAATGGAGCTGATTGGCAAGAGGAGGTCTATCAAAAGATAAAAGTCATGAAGGAGACATACCTAACCACACTAAGAGAGATATACCAGAAAAATGCTACTAAACTTCAGCAGCTCGAATCTTTGCCACAACAGCCTAAGTCGTATCAGCTTGAGAAGCTGAAAATGCTTAAGACCATGCTGGAGCACCTCATAACAGTGTTACAGGTTTCCAAAAGTAACATTTCACCTGTTTTGAAGTGGAAGTTGGGTTTATACGAGAAGCAGATAATAGCTTTCATTAATACAAATAGACCCAAGAAGCTTGATTCTTCTCTGCAACAAGGGCACCTCCCTTCACCTCATTTGCACTCCATAGAGCACTCCCAATCCCAAATTACTCGAGTGCAATCTCATGAAAATCATATGAGTCCCCAACTGCATTCGATGAACTTACAAGGATCTGTGGCAACAATGCAGCAGAACAACATGACAGGCTTGCAGCAAAACTATGTGTCTTCTTTGTCAGGGGTTTCAACTGCACAGCAGAACCCGATGAATCCATTGCAATCAAGTTCCAACACAGATCCAGGACAAGGAAACCCACTGTACTCATCACAGCAGGTCCCTGTTAGTTCTATCCAAGAAATCTGTGTCAGTGGTCCCCAACAAGCTAACAAGAATGCCTTGTCATCACAGAGTGGGATTAACATGCTGCAAGCAAACATTAATCCCCTTCAGTCAAATTCTGATTTTCTTCATAACCGATATCTGCAACAGGGACAGCAATTGAAACAGATTATACTCGGAAAACGGAATGAACAGCGACAGCTGCAGGAGCAGTTGATGCAGAAGCAGCAGCAGCAGATATTTCAACAACAACAGCAGCTGCGGCCTGGACAGTTGGAGCCCCAGCTTCAGCAAATCAGTGTTGTTAATGACATGAACATGAATCCCTTGTCATCATCACAGAGTGGGAGTGATATGCTGCAGGGAAGCATTGATTCCCTCAAGTCAAATTCTGGTATGGTTGATAACCAGCGTCAGAAGCAAGAAACTTTCTCTGTGAACCTCAAGCAACTGTATCAACAACTACAGATGCAGCAGCAATGGATGCAGAAACCGCAGATGCTTCAAGAAAAGCAACAGCAGCAGATACAGCAACGAGCAAAGCAGCGGCTGCATCTTATTTATTTCATCTATCTCATCTTTCTCATTATTCTATACATTGCTGCTGTTTTCGGGAAAGGCTATTGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

801

Amino Acids

90.35

Weight (kDa)

9.03

Isoelectric Point (pI)

71.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 21 - 100 7.2e-35 KIX domain
C2CH-3rd_BIRD-IDD PF22995 176 - 193 1.7e-09 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 196 - 234 2.5e-20 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 2 cut(s) 406, 1756
AccB1I GGYRCC 1 cut(s) 1491
AccB7I CCANNNNNTGG 1 cut(s) 401
AccII CGCG 1 cut(s) 94
AclWI GGATC 2 cut(s) 1612, 1724
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 4 cut(s) 246, 412, 1888, 2161
AcuI CTGAAG 8 cut(s) 275, 690, 748, 1004, 1052, 1256, 1865, 2045
AdeI CACNNNGTG 2 cut(s) 1844, 2117
AfaI GTAC 3 cut(s) 536, 978, 1754
AfiI CCNNNNNNNGG 7 cut(s) 35, 38, 149, 401, 449, 512, 1739
AflII CTTAAG 1 cut(s) 1334
AhdI GACNNNNNGTC 1 cut(s) 786
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 3 cut(s) 617, 1732, 2038
AjuI GAANNNNNNNTTGG 2 cut(s) 1394, 1426
Alw21I GWGCWC 3 cut(s) 174, 1353, 1527
Alw26I GTCTC 3 cut(s) 266, 285, 1214
AlwI GGATC 2 cut(s) 1612, 1724
AlwNI CAGNNNCTG 2 cut(s) 2032, 2323
Ama87I CYCGRG 1 cut(s) 1545
AoxI GGCC 3 cut(s) 294, 1149, 2036
ApoI RAATTY 4 cut(s) 246, 412, 1888, 2161
AseI ATTAAT 3 cut(s) 714, 1446, 1872
Asp700I GAANNNNTTC 3 cut(s) 501, 894, 1005
AspS9I GGNCC 3 cut(s) 1150, 1768, 1805
AsuHPI GGTGA 3 cut(s) 340, 1383, 1494
AsuII TTCGAA 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 1545
AvaII GGWCC 2 cut(s) 1768, 1805
BaeGI GKGCMC 1 cut(s) 1494
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 1491
BanII GRGCYC 3 cut(s) 174, 456, 2055
BarI GAAGNNNNNNTAC 2 cut(s) 1208, 1240
BbsI GAAGAC 2 cut(s) 318, 1653
Bbv12I GWGCWC 3 cut(s) 174, 1353, 1527
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 3 cut(s) 619, 1734, 2040
BciVI GTATCC 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 266, 285, 1214
BfaI CTAG 4 cut(s) 483, 518, 582, 770
BfmI CTRYAG 6 cut(s) 80, 993, 1012, 1976, 2132, 2237
BfrI CTTAAG 1 cut(s) 1334
BfuAI ACCTGC 2 cut(s) 406, 1756
BfuI GTATCC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 619, 1734, 2040
Bme18I GGWCC 2 cut(s) 1768, 1805
BmeRI GACNNNNNGTC 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 1545
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 1150, 1768, 1805
BmiI GGNNCC 4 cut(s) 1493, 1770, 1807, 2052
BmrFI CCNGG 3 cut(s) 619, 1734, 2040
BmrI ACTGGG 1 cut(s) 1042
BmuI ACTGGG 1 cut(s) 1042
BpiI GAAGAC 2 cut(s) 318, 1653
BpmI CTGGAG 2 cut(s) 423, 1367
Bpu1102I GCTNAGC 1 cut(s) 455
Bpu14I TTCGAA 1 cut(s) 898
BpuEI CTTGAG 4 cut(s) 158, 1337, 2138, 2201
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 1146
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 38, 149, 401, 449, 512, 1739
Bse1I ACTGG 2 cut(s) 544, 1048
Bse3DI GCAATG 5 cut(s) 57, 1086, 1706, 2258, 2370
BseBI CCWGG 3 cut(s) 619, 1734, 2040
BseDI CCNNGG 1 cut(s) 1146
BseGI GGATG 2 cut(s) 61, 2262
BseLI CCNNNNNNNGG 7 cut(s) 35, 38, 149, 401, 449, 512, 1739
BseMI GCAATG 5 cut(s) 57, 1086, 1706, 2258, 2370
BseMII CTCAG 4 cut(s) 296, 469, 884, 977
BseNI ACTGG 2 cut(s) 544, 1048
BseRI GAGGAG 1 cut(s) 1202
BseSI GKGCMC 1 cut(s) 1494
BseYI CCCAGC 2 cut(s) 320, 2055
BsgI GTGCAG 2 cut(s) 417, 1668
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 296, 1151, 2038
BshNI GGYRCC 1 cut(s) 1491
BsiHKAI GWGCWC 3 cut(s) 174, 1353, 1527
BsiHKCI CYCGRG 1 cut(s) 1545
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 4 cut(s) 1560, 1754, 1791, 1938
BslI CCNNNNNNNGG 7 cut(s) 35, 38, 149, 401, 449, 512, 1739
BsmAI GTCTC 3 cut(s) 266, 285, 1214
BsmFI GGGAC 4 cut(s) 1560, 1754, 1791, 1938
BsmI GAATGC 2 cut(s) 1585, 1831
BsnI GGCC 3 cut(s) 296, 1151, 2038
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 1545
Bsp119I TTCGAA 1 cut(s) 898
Bsp1286I GDGCHC 6 cut(s) 174, 456, 1353, 1494, 1527, 2055
Bsp1407I TGTACA 1 cut(s) 976
Bsp143I GATC 2 cut(s) 1604, 1729
Bsp1720I GCTNAGC 1 cut(s) 455
BspANI GGCC 3 cut(s) 296, 1151, 2038
BspCNI CTCAG 4 cut(s) 295, 468, 883, 976
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 2 cut(s) 1212, 1558
BspLI GGNNCC 4 cut(s) 1493, 1770, 1807, 2052
BspMAI CTGCAG 4 cut(s) 84, 997, 1980, 2136
BspMI ACCTGC 2 cut(s) 406, 1756
BspPI GGATC 2 cut(s) 1612, 1724
BspT104I TTCGAA 1 cut(s) 898
BspT107I GGYRCC 1 cut(s) 1491
BspTI CTTAAG 1 cut(s) 1334
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 5 cut(s) 57, 1086, 1706, 2258, 2370
BsrGI TGTACA 1 cut(s) 976
BsrI ACTGG 2 cut(s) 544, 1048
BssECI CCNNGG 1 cut(s) 1146
BssMI GATC 2 cut(s) 1604, 1729
Bst2UI CCWGG 3 cut(s) 619, 1734, 2040
Bst4CI ACNGT 7 cut(s) 38, 602, 1125, 1363, 1752, 2046, 2226
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 1334
BstAPI GCANNNNNTGC 7 cut(s) 56, 573, 931, 992, 1990, 2257, 2323
BstAUI TGTACA 1 cut(s) 976
BstBI TTCGAA 1 cut(s) 898
BstC8I GCNNGC 5 cut(s) 48, 84, 421, 1643, 1863
BstDEI CTNAG 6 cut(s) 282, 455, 870, 963, 1238, 1302
BstDSI CCRYGG 1 cut(s) 1146
BstF5I GGATG 2 cut(s) 61, 2262
BstFNI CGCG 1 cut(s) 94
BstKTI GATC 2 cut(s) 1607, 1732
BstMAI GTCTC 3 cut(s) 266, 285, 1214
BstMBI GATC 2 cut(s) 1604, 1729
BstNI CCWGG 3 cut(s) 619, 1734, 2040
BstNSI RCATGY 1 cut(s) 1858
BstSCI CCNGG 3 cut(s) 617, 1732, 2038
BstSFI CTRYAG 6 cut(s) 80, 993, 1012, 1976, 2132, 2237
BstSLI GKGCMC 1 cut(s) 1494
BstUI CGCG 1 cut(s) 94
BstV2I GAAGAC 2 cut(s) 318, 1653
BstX2I RGATCY 2 cut(s) 1604, 1729
BstYI RGATCY 2 cut(s) 1604, 1729
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 3 cut(s) 296, 1151, 2038
BtgI CCRYGG 1 cut(s) 1146
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 2 cut(s) 61, 2262
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 5 cut(s) 1002, 1368, 1748, 1807, 2077
BveI ACCTGC 2 cut(s) 406, 1756
Cac8I GCNNGC 5 cut(s) 48, 84, 421, 1643, 1863
CaiI CAGNNNCTG 2 cut(s) 2032, 2323
CciI TCATGA 2 cut(s) 1212, 1558
Cfr13I GGNCC 3 cut(s) 1150, 1768, 1805
CseI GACGC 1 cut(s) 2174
Csp6I GTAC 3 cut(s) 535, 977, 1753
CviQI GTAC 3 cut(s) 535, 977, 1753
DdeI CTNAG 6 cut(s) 282, 455, 870, 963, 1238, 1302
DpnI GATC 2 cut(s) 1606, 1731
DpnII GATC 2 cut(s) 1604, 1729
DraIII CACNNNGTG 2 cut(s) 1844, 2117
DriI GACNNNNNGTC 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 2 cut(s) 101, 1092
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 3 cut(s) 174, 456, 2055
Eco31I GGTCTC 1 cut(s) 266
Eco32I GATATC 1 cut(s) 1913
Eco47I GGWCC 2 cut(s) 1768, 1805
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 8 cut(s) 275, 690, 748, 1004, 1052, 1256, 1865, 2045
Eco88I CYCGRG 1 cut(s) 1545
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 1768
EcoRII CCWGG 3 cut(s) 617, 1732, 2038
EcoRV GATATC 1 cut(s) 1913
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 3 cut(s) 174, 456, 2055
FalI AAGNNNNNCTT 2 cut(s) 1814, 1846
FaqI GGGAC 4 cut(s) 1560, 1754, 1791, 1938
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 1569
FokI GGATG 2 cut(s) 68, 2269
FriOI GRGCYC 3 cut(s) 174, 456, 2055
FspBI CTAG 4 cut(s) 483, 518, 582, 770
GsaI CCCAGC 2 cut(s) 324, 2059
GsuI CTGGAG 2 cut(s) 423, 1367
HaeIII GGCC 3 cut(s) 296, 1151, 2038
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 2174
HincII GTYRAC 2 cut(s) 1053, 1128
HindII GTYRAC 2 cut(s) 1053, 1128
HindIII AAGCTT 1 cut(s) 1466
HpaI GTTAAC 1 cut(s) 1128
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 340, 1383, 1494
Hpy166II GTNNAC 4 cut(s) 475, 1053, 1128, 2212
Hpy188III TCNNGA 9 cut(s) 155, 175, 770, 1139, 1160, 1213, 1559, 2279, 2386
Hpy8I GTNNAC 4 cut(s) 475, 1053, 1128, 2212
HpyAV CCTTC 5 cut(s) 550, 772, 1210, 1509, 1889
HpyCH4III ACNGT 7 cut(s) 38, 602, 1125, 1363, 1752, 2046, 2226
HpyCH4IV ACGT 1 cut(s) 471
HpyF3I CTNAG 6 cut(s) 282, 455, 870, 963, 1238, 1302
HpySE526I ACGT 1 cut(s) 471
KspAI GTTAAC 1 cut(s) 1128
Kzo9I GATC 2 cut(s) 1604, 1729
LmnI GCTCC 4 cut(s) 1172, 1348, 1981, 2050
MaeI CTAG 4 cut(s) 483, 518, 582, 770
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 5 cut(s) 346, 386, 596, 1365, 1382
MalI GATC 2 cut(s) 1606, 1731
MboI GATC 2 cut(s) 1604, 1729
MfeI CAATTG 1 cut(s) 1931
MflI RGATCY 2 cut(s) 1604, 1729
MhlI GDGCHC 6 cut(s) 174, 456, 1353, 1494, 1527, 2055
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 3 cut(s) 34, 731, 1582
MmeI TCCRAC 5 cut(s) 336, 714, 931, 1746, 2028
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 661
MroXI GAANNNNTTC 3 cut(s) 501, 894, 1005
MscI TGGCCA 1 cut(s) 296
MseI TTAA 8 cut(s) 714, 1127, 1335, 1446, 1851, 1872, 2079, 2404
MslI CAYNNNNRTG 2 cut(s) 1361, 2090
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 4 cut(s) 862, 1975, 2032, 2320
MspCI CTTAAG 1 cut(s) 1334
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 619, 1734, 2040
MunI CAATTG 1 cut(s) 1931
Mva1269I GAATGC 2 cut(s) 1585, 1831
MvaI CCWGG 3 cut(s) 619, 1734, 2040
MvnI CGCG 1 cut(s) 94
NdeI CATATG 1 cut(s) 1569
NdeII GATC 2 cut(s) 1604, 1729
NlaIV GGNNCC 4 cut(s) 1493, 1770, 1807, 2052
NmuCI GTSAC 2 cut(s) 346, 596
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 1 cut(s) 1858
NspV TTCGAA 1 cut(s) 898
PaeR7I CTCGAG 1 cut(s) 1545
PagI TCATGA 2 cut(s) 1212, 1558
PaqCI CACCTGC 1 cut(s) 406
PctI GAATGC 2 cut(s) 1585, 1831
PdmI GAANNNNTTC 3 cut(s) 501, 894, 1005
PflFI GACNNNGTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 401
PfoI TCCNGGA 2 cut(s) 617, 1732
PleI GAGTC 3 cut(s) 33, 731, 1581
PpsI GAGTC 3 cut(s) 33, 731, 1581
PpuMI RGGWCCY 1 cut(s) 1768
PshBI ATTAAT 3 cut(s) 714, 1446, 1872
Psp124BI GAGCTC 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 1768
Psp6I CCWGG 3 cut(s) 617, 1732, 2038
PspFI CCCAGC 2 cut(s) 320, 2055
PspGI CCWGG 3 cut(s) 617, 1732, 2038
PspN4I GGNNCC 4 cut(s) 1493, 1770, 1807, 2052
PspPI GGNCC 3 cut(s) 1150, 1768, 1805
PspPPI RGGWCCY 1 cut(s) 1768
PspXI VCTCGAGB 1 cut(s) 1545
PstI CTGCAG 4 cut(s) 84, 997, 1980, 2136
PstNI CAGNNNCTG 2 cut(s) 2032, 2323
PsuI RGATCY 2 cut(s) 1604, 1729
PsyI GACNNNGTC 1 cut(s) 277
PvuII CAGCTG 2 cut(s) 1975, 2032
RsaI GTAC 3 cut(s) 536, 978, 1754
RsaNI GTAC 3 cut(s) 535, 977, 1753
RseI CAYNNNNRTG 2 cut(s) 1361, 2090
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 8 cut(s) 714, 1127, 1335, 1446, 1851, 1872, 2079, 2404
Sau3AI GATC 2 cut(s) 1604, 1729
Sau96I GGNCC 3 cut(s) 1150, 1768, 1805
SchI GAGTC 3 cut(s) 34, 731, 1582
ScrFI CCNGG 3 cut(s) 619, 1734, 2040
SduI GDGCHC 6 cut(s) 174, 456, 1353, 1494, 1527, 2055
SfcI CTRYAG 6 cut(s) 80, 993, 1012, 1976, 2132, 2237
Sfr274I CTCGAG 1 cut(s) 1545
SfuI TTCGAA 1 cut(s) 898
SinI GGWCC 2 cut(s) 1768, 1805
SlaI CTCGAG 1 cut(s) 1545
SmiMI CAYNNNNRTG 2 cut(s) 1361, 2090
SmlI CTYRAG 6 cut(s) 173, 1316, 1334, 1545, 2153, 2216
SmoI CTYRAG 6 cut(s) 173, 1316, 1334, 1545, 2153, 2216
SspI AATATT 2 cut(s) 718, 1098
SspMI CTAG 4 cut(s) 483, 518, 582, 770
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 3 cut(s) 617, 1732, 2038
TaaI ACNGT 7 cut(s) 38, 602, 1125, 1363, 1752, 2046, 2226
TaiI ACGT 1 cut(s) 474
TaqI TCGA 6 cut(s) 195, 527, 898, 1281, 1546, 1589
TatI WGTACW 2 cut(s) 976, 1752
TauI GCSGC 4 cut(s) 97, 668, 2038, 2323
Tru1I TTAA 8 cut(s) 714, 1127, 1335, 1446, 1851, 1872, 2079, 2404
Tru9I TTAA 8 cut(s) 714, 1127, 1335, 1446, 1851, 1872, 2079, 2404
TscAI CASTG 5 cut(s) 1002, 1368, 1755, 1807, 2077
TseFI GTSAC 2 cut(s) 346, 596
Tsp45I GTSAC 2 cut(s) 346, 596
TspGWI ACGGA 2 cut(s) 256, 1972
TspRI CASTG 5 cut(s) 1002, 1368, 1755, 1807, 2077
Tth111I GACNNNGTC 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 1334
VpaK11BI GGWCC 2 cut(s) 1768, 1805
VspI ATTAAT 3 cut(s) 714, 1446, 1872
XapI RAATTY 4 cut(s) 246, 412, 1888, 2161
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 1 cut(s) 1858
XhoI CTCGAG 1 cut(s) 1545
XmnI GAANNNNTTC 3 cut(s) 501, 894, 1005
XspI CTAG 4 cut(s) 483, 518, 582, 770
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.