Rh5DG533100

KIX domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
82165197 .. 82174139
8943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG533100.1

Sequence Viewer

Length: 1665 bp
ATGGGTTTGTCTCGAATGAAACAAAGCCATGAAAGTGTTAATGAGGGGAACAGCAACAAGATGAGTAGAGGGAATTCTTGTCTTAAGGCTGGCTCTGAACTCGAGAGAATCGCTGCAACGCTTGAGGAGGAGATATTGATATGCTGTTGCCTCAAGCCAGTACGGATTAAGAAGAACTGTGCCAGCTCATCCTCCTGTCCCCTCAAAGAACAGATTGTTGGGTTGGTTGATTTAATGGACCCCAATAATGAGAGGCCTCCTCAAGTCGGAGAACCCTTGTTGGATGCATTAGATTGGAGGAGTCAATTTCCAGTAGATGCACGACCTAGAATTGTCAACAAGATAATTGATGTGTTAAAGAGGATCCCCTCCCATAGTCATATGGGATTACCAGAACTCGAGGGAATCGCTGCAACATTTGAGGAGAAGATGTATGCTGCTGCCTCAAGCCAGTCGGATTATCTACGAAAAATTTCTCTGAAGATGCTGCTAGTCTGGAACACCAAACCTCGTTCCCCTTCCAACCTGAAACGGCATCGTGTCCTTGCTTTTGTTTACAATAAAAATTGCTGTCAAACAAGAGAAGACTTGATTCATCTGCATCCTATTCTTGTTTTCCATAGTTCCACTCAAAGAAAACGTTTGTTGAGAGTGTTAAGTTTGATGGATGCCAACTATTGGAGCCCTTCTCAAGGAGGAGAACAGTCTATGTATGTAGGTGATTGGAGGAGCCAATTGCTGCCAGATTTGCGGCAAGTGTTTGTTAATAAGATAATGGATACATTGAAAAGGTATCTGCCTTTCTCTAGTCAAGAGGGTTTACTTGAACTCCAGAAAATTGCTGTAAGGTTTGAGGAAAAGATTTATACTGCTGCCACAAGTCAGTCGGATTATGAACGAAAAATTTCTCTGAAGATGCTCACAATGGAGACCAAGTCGCAGAACACAAGGGGCAGCTCTATACAATTCAACTCAGCCAGCAATAGCAAGGGACTCCCTGATCCTGTTTTAATGAATACCAGTAACAATGGGAGGCCTCCTCAAGGTGGAGGACCATCTATGGACACATCAGATTGGAGTCAATTGCCGTCAGATGCACAACATGGATGGCAACAGGAAGCTCCCCAACAGCAACGGCAGCAAACCTCGAATTCTCAGCAGTACTATGTTTACTCGCAGCAGCATATGTACCAGCAACAGTTACAACAACAACTCCTCCTTCAAAGTAATATTCAACTGCAACAAGAGCAGCAGCAGATTCCACCACAAAAAACTCAGTTGCAATCTTCTCAGCAATCAGCATCTGTTATGCAACCTTCGGTGGAGCCATTGCATCTCTCTGTGCAACCTTCTGAGCAATTGCCGCCAGATGCACGGCATAGAATTGTCAACAAAATAACTGATGTGTTAAAGAGGAATCCGTCCTGTGGTCAAATGGGATTACCAGAACTCGAGAGAATCGCAGCAACACTTGAGGAGAAGATATATGCCGTTGCCTCAAGCCAGGCGGATTATCTGCGTAAAGTAAGTCTGAAGATGCTCACCATGGAGACGCAAATCGCAGCTCCCCCATCCAATGACAGCTTGGAATCATTATTTGCTTCCCTGGAGTTGCAGGACTACATTAATCGTCTCCAGATTCTAAAAGTTGTTTGGCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

554

Amino Acids

62.87

Weight (kDa)

8.68

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 98 - 172 2.6e-21 KIX domain
KIX_2 PF16987 240 - 319 9.1e-31 KIX domain
KIX_2 PF16987 452 - 524 1.8e-21 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 678
AciI CCGC 3 cut(s) 751, 1364, 1508
AclI AACGTT 1 cut(s) 640
AclWI GGATC 3 cut(s) 358, 371, 995
AcsI RAATTY 4 cut(s) 73, 471, 903, 1150
AcuI CTGAAG 3 cut(s) 500, 932, 1553
AfaI GTAC 3 cut(s) 162, 1163, 1190
AfiI CCNNNNNNNGG 6 cut(s) 266, 678, 692, 1043, 1046, 1427
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 5 cut(s) 787, 827, 970, 1223, 1235
AjnI CCWGG 2 cut(s) 1503, 1605
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 5 cut(s) 186, 957, 1121, 1565, 1584
AluI AGCT 5 cut(s) 186, 957, 1121, 1565, 1584
Alw26I GTCTC 4 cut(s) 15, 923, 1544, 1637
AlwI GGATC 3 cut(s) 358, 371, 995
AlwNI CAGNNNCTG 1 cut(s) 1304
Ama87I CYCGRG 3 cut(s) 101, 398, 1451
AoxI GGCC 2 cut(s) 254, 1034
ApoI RAATTY 4 cut(s) 73, 471, 903, 1150
AseI ATTAAT 1 cut(s) 1626
Asp700I GAANNNNTTC 2 cut(s) 472, 904
AspS9I GGNCC 2 cut(s) 238, 1052
AsuHPI GGTGA 2 cut(s) 731, 1534
AvaI CYCGRG 3 cut(s) 101, 398, 1451
AvaII GGWCC 2 cut(s) 238, 1052
BamHI GGATCC 1 cut(s) 363
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 591
BccI CCATC 4 cut(s) 658, 1063, 1101, 1579
BceAI ACGGC 5 cut(s) 548, 1072, 1151, 1391, 1475
BciT130I CCWGG 2 cut(s) 1505, 1607
BciVI GTATCC 1 cut(s) 772
BcoDI GTCTC 4 cut(s) 15, 923, 1544, 1637
BfaI CTAG 3 cut(s) 327, 491, 807
BfrI CTTAAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 772
BmcAI AGTACT 1 cut(s) 1163
Bme1390I CCNGG 2 cut(s) 1505, 1607
Bme18I GGWCC 2 cut(s) 238, 1052
BmeT110I CYCGRG 3 cut(s) 101, 398, 1451
BmgT120I GGNCC 2 cut(s) 238, 1052
BmiI GGNNCC 5 cut(s) 240, 365, 683, 731, 1326
BmrFI CCNGG 2 cut(s) 1505, 1607
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 6 cut(s) 244, 276, 673, 705, 1024, 1056
BpmI CTGGAG 3 cut(s) 815, 1619, 1628
BpuEI CTTGAG 8 cut(s) 137, 143, 246, 430, 675, 1026, 1483, 1493
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 2 cut(s) 1545, 1605
Bsc4I CCNNNNNNNGG 6 cut(s) 266, 678, 692, 1043, 1046, 1427
Bse1I ACTGG 4 cut(s) 158, 311, 451, 1020
Bse3DI GCAATG 1 cut(s) 1328
BseBI CCWGG 2 cut(s) 1505, 1607
BseDI CCNNGG 2 cut(s) 1545, 1605
BseGI GGATG 6 cut(s) 188, 289, 601, 673, 1112, 1571
BseLI CCNNNNNNNGG 6 cut(s) 266, 678, 692, 1043, 1046, 1427
BseMI GCAATG 1 cut(s) 1328
BseMII CTCAG 5 cut(s) 987, 1169, 1289, 1304, 1344
BseNI ACTGG 4 cut(s) 158, 311, 451, 1020
BshFI GGCC 2 cut(s) 256, 1036
BsiHKCI CYCGRG 3 cut(s) 101, 398, 1451
BslFI GGGAC 2 cut(s) 183, 1005
BslI CCNNNNNNNGG 6 cut(s) 266, 678, 692, 1043, 1046, 1427
BsmAI GTCTC 4 cut(s) 15, 923, 1544, 1637
BsmBI CGTCTC 2 cut(s) 1544, 1637
BsmFI GGGAC 2 cut(s) 183, 1005
BsnI GGCC 2 cut(s) 256, 1036
Bso31I GGTCTC 1 cut(s) 923
BsoBI CYCGRG 3 cut(s) 101, 398, 1451
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 2 cut(s) 363, 1000
Bsp19I CCATGG 1 cut(s) 1545
BspACI CCGC 3 cut(s) 751, 1364, 1508
BspANI GGCC 2 cut(s) 256, 1036
BspCNI CTCAG 5 cut(s) 986, 1168, 1288, 1303, 1345
BspLI GGNNCC 5 cut(s) 240, 365, 683, 731, 1326
BspPI GGATC 3 cut(s) 358, 371, 995
BspTI CTTAAG 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 1328
BsrI ACTGG 4 cut(s) 158, 311, 451, 1020
BssECI CCNNGG 2 cut(s) 1545, 1605
BssMI GATC 2 cut(s) 363, 1000
BssT1I CCWWGG 1 cut(s) 1545
Bst2UI CCWGG 2 cut(s) 1505, 1607
Bst4CI ACNGT 3 cut(s) 179, 705, 1200
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 91, 184, 979
BstDEI CTNAG 5 cut(s) 973, 1155, 1275, 1290, 1353
BstDSI CCRYGG 1 cut(s) 1545
BstENI CCTNNNNNAGG 2 cut(s) 690, 1041
BstF5I GGATG 6 cut(s) 188, 289, 601, 673, 1112, 1571
BstKTI GATC 2 cut(s) 366, 1003
BstMAI GTCTC 4 cut(s) 15, 923, 1544, 1637
BstMBI GATC 2 cut(s) 363, 1000
BstMWI GCNNNNNNNGC 4 cut(s) 748, 1138, 1246, 1363
BstNI CCWGG 2 cut(s) 1505, 1607
BstSCI CCNGG 2 cut(s) 1503, 1605
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuI GTATCC 1 cut(s) 772
BsuRI GGCC 2 cut(s) 256, 1036
BtgI CCRYGG 1 cut(s) 1545
BtsCI GGATG 6 cut(s) 188, 289, 601, 673, 1112, 1571
Cac8I GCNNGC 3 cut(s) 91, 184, 979
CaiI CAGNNNCTG 1 cut(s) 1304
Cfr13I GGNCC 2 cut(s) 238, 1052
CseI GACGC 1 cut(s) 1561
Csp6I GTAC 3 cut(s) 161, 1162, 1189
CviAII CATG 3 cut(s) 29, 1103, 1546
CviQI GTAC 3 cut(s) 161, 1162, 1189
DdeI CTNAG 5 cut(s) 973, 1155, 1275, 1290, 1353
DpnI GATC 2 cut(s) 365, 1002
DpnII GATC 2 cut(s) 363, 1000
EciI GGCGGA 1 cut(s) 1523
Eco130I CCWWGG 1 cut(s) 1545
Eco147I AGGCCT 2 cut(s) 256, 1036
Eco24I GRGCYC 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 923
Eco47I GGWCC 2 cut(s) 238, 1052
Eco57I CTGAAG 3 cut(s) 500, 932, 1553
Eco88I CYCGRG 3 cut(s) 101, 398, 1451
EcoNI CCTNNNNNAGG 2 cut(s) 690, 1041
EcoRI GAATTC 2 cut(s) 73, 1150
EcoRII CCWGG 2 cut(s) 1503, 1605
EcoT14I CCWWGG 1 cut(s) 1545
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 1545
Esp3I CGTCTC 2 cut(s) 1544, 1637
FaeI CATG 3 cut(s) 32, 1106, 1549
FaqI GGGAC 2 cut(s) 183, 1005
FatI CATG 3 cut(s) 28, 1102, 1545
FauNDI CATATG 2 cut(s) 381, 1185
FokI GGATG 6 cut(s) 175, 296, 588, 680, 1119, 1558
FriOI GRGCYC 1 cut(s) 686
FspBI CTAG 3 cut(s) 327, 491, 807
GsuI CTGGAG 3 cut(s) 815, 1619, 1628
HaeIII GGCC 2 cut(s) 256, 1036
HgaI GACGC 1 cut(s) 1561
Hin1II CATG 3 cut(s) 32, 1106, 1549
HincII GTYRAC 2 cut(s) 337, 1390
HindII GTYRAC 2 cut(s) 337, 1390
HphI GGTGA 2 cut(s) 731, 1534
Hpy166II GTNNAC 5 cut(s) 337, 556, 821, 1171, 1390
Hpy188III TCNNGA 7 cut(s) 12, 103, 496, 812, 832, 1453, 1636
Hpy8I GTNNAC 5 cut(s) 337, 556, 821, 1171, 1390
HpyAV CCTTC 5 cut(s) 528, 696, 1229, 1326, 1359
HpyCH4III ACNGT 3 cut(s) 179, 705, 1200
HpyCH4IV ACGT 1 cut(s) 640
HpyF10VI GCNNNNNNNGC 4 cut(s) 748, 1138, 1246, 1363
HpyF3I CTNAG 5 cut(s) 973, 1155, 1275, 1290, 1353
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 3 cut(s) 32, 1106, 1549
Kzo9I GATC 2 cut(s) 363, 1000
LmnI GCTCC 5 cut(s) 681, 729, 1126, 1324, 1570
MaeI CTAG 3 cut(s) 327, 491, 807
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 2 cut(s) 1022, 1200
MalI GATC 2 cut(s) 365, 1002
MboI GATC 2 cut(s) 363, 1000
MboII GAAGA 8 cut(s) 184, 439, 493, 596, 925, 1278, 1492, 1546
MfeI CAATTG 3 cut(s) 734, 1082, 1358
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 686
MlyI GAGTC 3 cut(s) 310, 987, 1087
MmeI TCCRAC 5 cut(s) 247, 261, 435, 546, 867
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 2 cut(s) 472, 904
MslI CAYNNNNRTG 1 cut(s) 33
MspCI CTTAAG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 1505, 1607
MunI CAATTG 3 cut(s) 734, 1082, 1358
MvaI CCWGG 2 cut(s) 1505, 1607
MwoI GCNNNNNNNGC 4 cut(s) 748, 1138, 1246, 1363
NcoI CCATGG 1 cut(s) 1545
NdeI CATATG 2 cut(s) 381, 1185
NdeII GATC 2 cut(s) 363, 1000
NlaIII CATG 3 cut(s) 32, 1106, 1549
NlaIV GGNNCC 5 cut(s) 240, 365, 683, 731, 1326
NsiI ATGCAT 1 cut(s) 289
PaeR7I CTCGAG 3 cut(s) 101, 398, 1451
PceI AGGCCT 2 cut(s) 256, 1036
PdmI GAANNNNTTC 2 cut(s) 472, 904
PfeI GAWTC 8 cut(s) 108, 405, 592, 1258, 1417, 1458, 1589, 1639
PflFI GACNNNGTC 1 cut(s) 934
PflMI CCANNNNNTGG 1 cut(s) 678
PleI GAGTC 3 cut(s) 309, 987, 1086
PpsI GAGTC 3 cut(s) 309, 987, 1086
PshBI ATTAAT 1 cut(s) 1626
Psp1406I AACGTT 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 1503, 1605
PspGI CCWGG 2 cut(s) 1503, 1605
PspN4I GGNNCC 5 cut(s) 240, 365, 683, 731, 1326
PspPI GGNCC 2 cut(s) 238, 1052
PspXI VCTCGAGB 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 1304
PsuI RGATCY 1 cut(s) 363
PsyI GACNNNGTC 1 cut(s) 934
RsaI GTAC 3 cut(s) 162, 1163, 1190
RsaNI GTAC 3 cut(s) 161, 1162, 1189
RseI CAYNNNNRTG 1 cut(s) 33
Sau3AI GATC 2 cut(s) 363, 1000
Sau96I GGNCC 2 cut(s) 238, 1052
ScaI AGTACT 1 cut(s) 1163
SchI GAGTC 3 cut(s) 310, 987, 1087
ScrFI CCNGG 2 cut(s) 1505, 1607
SduI GDGCHC 1 cut(s) 686
Sfr274I CTCGAG 3 cut(s) 101, 398, 1451
SinI GGWCC 2 cut(s) 238, 1052
SlaI CTCGAG 3 cut(s) 101, 398, 1451
SmiMI CAYNNNNRTG 1 cut(s) 33
SseBI AGGCCT 2 cut(s) 256, 1036
SsiI CCGC 3 cut(s) 751, 1364, 1508
SspI AATATT 1 cut(s) 1231
SspMI CTAG 3 cut(s) 327, 491, 807
StuI AGGCCT 2 cut(s) 256, 1036
StyD4I CCNGG 2 cut(s) 1503, 1605
StyI CCWWGG 1 cut(s) 1545
TaaI ACNGT 3 cut(s) 179, 705, 1200
TaiI ACGT 1 cut(s) 643
TaqI TCGA 5 cut(s) 13, 102, 399, 1148, 1452
TatI WGTACW 1 cut(s) 1161
TauI GCSGC 2 cut(s) 754, 1366
TfiI GAWTC 8 cut(s) 108, 405, 592, 1258, 1417, 1458, 1589, 1639
TspDTI ATGAA 5 cut(s) 32, 45, 584, 909, 1028
TspGWI ACGGA 2 cut(s) 178, 1410
Tth111I GACNNNGTC 1 cut(s) 934
Van91I CCANNNNNTGG 1 cut(s) 678
Vha464I CTTAAG 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 238, 1052
VspI ATTAAT 1 cut(s) 1626
XagI CCTNNNNNAGG 2 cut(s) 690, 1041
XapI RAATTY 4 cut(s) 73, 471, 903, 1150
XcmI CCANNNNNNNNNTGG 1 cut(s) 1582
XhoI CTCGAG 3 cut(s) 101, 398, 1451
XmnI GAANNNNTTC 2 cut(s) 472, 904
XspI CTAG 3 cut(s) 327, 491, 807
ZrmI AGTACT 1 cut(s) 1163
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.