Rh5DG532700

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000315
Physical Location & Seq
Forward (+)
82090827 .. 82092842
2016 bp
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UTR
Exon/CDS
Intron
Rh5DG532700.1

Sequence Viewer

Length: 429 bp
ATGGACATAAAAACCCAGCCTATGCAGAAGTCCACTAGGGTCAACCTCTCTGTCTTCATCCCCCTGAGACTCAAGATTTTGATGGATACCAATATCAACAGTGACCAGAGGCCTCCACAGGGTGGAGAAGCCTCGCATGACGCCGGCGATTGGAGGATGTACCTGACGCCAGATTCAAGGCAAAGAATTGTCAACAAGATACTTGATACGTTGAAGAGGCATCTCTCCTTCTCTGGCCAAGAGGGGTTGCTTGAACTGAAGAGAATTGCTTTAAGGTTTGAGGAAAAGGTGTATGCTACTGCATCAAGCCAGTCGGATTATCTACGAAAAATTTCTCTGAAGATGCTTACCATGGAGACCGCGAAAGTTGCAACCAGTCCCCCCTCCAACCTGAAACGGCATCGTGTCCTTGCTTTTGAAACAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

142

Amino Acids

16.27

Weight (kDa)

9.86

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 49 - 123 8.3e-31 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccII CGCG 1 cut(s) 362
AciI CCGC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 2 cut(s) 278, 359
AcyI GRCGYC 2 cut(s) 141, 167
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 119, 122, 150
AgsI TTSAA 4 cut(s) 177, 214, 254, 419
Alw26I GTCTC 2 cut(s) 61, 350
AoxI GGCC 2 cut(s) 110, 235
ApoI RAATTY 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 46
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 413
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 61, 350
BfaI CTAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 79
BmsI GCATC 4 cut(s) 229, 311, 333, 409
BpiI GAAGAC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 141, 167
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 122, 150
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 310, 375
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 57, 162
BseLI CCNNNNNNNGG 3 cut(s) 119, 122, 150
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 310, 375
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 112, 237
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 119, 122, 150
BsmAI GTCTC 2 cut(s) 61, 350
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 2 cut(s) 112, 237
Bso31I GGTCTC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 1 cut(s) 360
BspANI GGCC 2 cut(s) 112, 237
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 2 cut(s) 310, 375
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 351
BssNI GRCGYC 2 cut(s) 141, 167
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 209, 254
BstACI GRCGYC 2 cut(s) 141, 167
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 57, 162
BstFNI CGCG 1 cut(s) 362
BstMAI GTCTC 2 cut(s) 61, 350
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstUI CGCG 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 2 cut(s) 112, 237
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 57, 162
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 143
CseI GACGC 2 cut(s) 149, 175
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 137, 352
CviJI RGCY 5 cut(s) 19, 112, 131, 237, 309
CviKI_1 RGCY 5 cut(s) 19, 112, 131, 237, 309
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 65
DraIII CACNNNGTG 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 209, 254
EarI CTCTTC 2 cut(s) 209, 254
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 350
Eco57I CTGAAG 2 cut(s) 278, 359
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 140, 355
FaiI YATR 5 cut(s) 8, 23, 138, 294, 353
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 136, 351
FokI GGATG 2 cut(s) 44, 169
FspBI CTAG 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 112, 237
HapII CCGG 1 cut(s) 144
HgaI GACGC 2 cut(s) 149, 175
Hin1I GRCGYC 2 cut(s) 141, 167
Hin1II CATG 2 cut(s) 140, 355
HincII GTYRAC 2 cut(s) 43, 193
HindII GTYRAC 2 cut(s) 43, 193
HinfI GANTC 2 cut(s) 69, 173
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 3 cut(s) 33, 43, 193
Hpy188I TCNGA 2 cut(s) 316, 339
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 3 cut(s) 33, 43, 193
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 25, 302, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 2 cut(s) 141, 167
Hsp92II CATG 2 cut(s) 140, 355
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
LweI GCATC 4 cut(s) 229, 311, 333, 409
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 101
MboII GAAGA 4 cut(s) 46, 226, 271, 352
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 3 cut(s) 186, 264, 330
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 2 cut(s) 294, 411
MnlI CCTC 9 cut(s) 56, 102, 123, 142, 147, 210, 235, 274, 394
Mox20I TGGCCA 1 cut(s) 237
MreI CGCCGGCG 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 331
MscI TGGCCA 1 cut(s) 237
MseI TTAA 2 cut(s) 272, 427
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 368
NaeI GCCGGC 1 cut(s) 145
NcoI CCATGG 1 cut(s) 351
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 2 cut(s) 140, 355
NmuCI GTSAC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 122
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 15
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 272, 427
SchI GAGTC 1 cut(s) 63
SetI ASST 6 cut(s) 48, 165, 212, 278, 291, 393
SfaNI GCATC 4 cut(s) 229, 311, 333, 409
SgrAI CRCCGGYG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 3 cut(s) 186, 264, 330
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 36
StuI AGGCCT 1 cut(s) 112
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 212
TasI AATT 3 cut(s) 186, 264, 330
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 272, 427
Tru9I TTAA 2 cut(s) 272, 427
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.