RLG00000036591

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000315
Physical Location & Seq
Forward (+)
82259934 .. 82263462
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036591

Sequence Viewer

Length: 990 bp
ATGGGATTACCAGAACTCGAGGGAATCGCTGCAACATTTGAGGAGAAGATAGAAGACTTGATTAGGATTCTTGTTTTCCATAGTTCCACTCAAAGAAAACGTTTGTTAGGAGTTTTAAATTTGATGGATGCCAACAATTGGAGCCCTTCTCAAGGAGGAGAACAGTCTATGTATGTAGGTGATTGGAGGACCCAATTGCCACCAGATTTGCGGCAAGTGTTTGTCAATAAGATAATGGATACATTGAAGAGGCATCTGCCTTTCTCTGGTCCAGAGGGATTACTTGAACTCCAGAAAATTGCTGTAAGGTTTGAGGAAAAGATGTATACTGCTGCCACAAGTCAGTTGGATTATGAACGAAAAATTTCTCTGAAGATGCACACAATGGAGACCAAGTCGCAGAACACAAGGGGCAGCTCTATACAATTCAACTCAGCCAGCAATAGCAAGAGACTCCCCGATCCTGTTTTAATGAATACCAGTAACAATGGGAGGCCTCCTCAAGGTGGAGGACCCTCTATGGACACATCAGATTGGAGTCAATTGCCGTCAGATGCACAACATGGATGGCAACAGGAAGCTCCCCAACAGCAACGGCAGCAAACCTCGAATTCTCAGCAGTACTATGTTTACTCGCAGCAGCATATGTACCAGCAACAGTTACAACAACAACTCCTCCTTCAAAGCCATATTCAACTGCAACAACAGCAGCAGCTGATTCCACTACAAAAAACTCAGTTGCAATCTTCTCAGCAATCAGCATCTGTTATGCAACCTTCGGTGGAGCCATTGCCTCTCTCTGTGCAACCTTCTGAGCAATTGCCGCCAGATGCGCGACATTGGGTTGTCAACAAAATAACTAATGTGTTAAAGAGGAATCCCTCCTGTGGTCAAATGGGATTACCAGAACTTGAGAGAATCGCAGCAACACTTGAGGAGAAGATATATGCCGTTGCCTCAAGCCAGGCAGATTATCTGCGTAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

330

Amino Acids

37.39

Weight (kDa)

7.07

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 60 - 139 7.1e-32 KIX domain
KIX_2 PF16987 272 - 329 4.6e-14 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 835
AciI CCGC 2 cut(s) 211, 824
AclI AACGTT 1 cut(s) 100
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 3 cut(s) 118, 363, 610
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 2 cut(s) 623, 650
AfiI CCNNNNNNNGG 6 cut(s) 138, 152, 266, 503, 506, 887
AgsI TTSAA 5 cut(s) 247, 287, 430, 683, 695
AjnI CCWGG 1 cut(s) 963
AluBI AGCT 3 cut(s) 417, 581, 715
AluI AGCT 3 cut(s) 417, 581, 715
Alw26I GTCTC 2 cut(s) 383, 445
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 2 cut(s) 715, 764
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 9 cut(s) 29, 332, 414, 598, 637, 640, 709, 712, 923
ApoI RAATTY 3 cut(s) 118, 363, 610
Asp700I GAANNNNTTC 1 cut(s) 364
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 3 cut(s) 189, 269, 512
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 3 cut(s) 189, 269, 512
BanII GRGCYC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 9 cut(s) 16, 319, 426, 610, 649, 652, 721, 724, 935
BccI CCATC 2 cut(s) 118, 561
BceAI ACGGC 3 cut(s) 532, 611, 935
BciT130I CCWGG 1 cut(s) 965
BciVI GTATCC 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 383, 445
BfuI GTATCC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 965
Bme18I GGWCC 3 cut(s) 189, 269, 512
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 189, 269, 512
BmiI GGNNCC 4 cut(s) 143, 191, 514, 786
BmrFI CCNGG 1 cut(s) 965
BmsI GCATC 6 cut(s) 118, 262, 366, 544, 770, 820
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 484, 516
BpmI CTGGAG 1 cut(s) 275
BpuEI CTTGAG 5 cut(s) 135, 486, 932, 943, 953
BsaI GGTCTC 1 cut(s) 383
BsaXI ACNNNNNCTCC 8 cut(s) 273, 303, 380, 410, 657, 660, 687, 690
Bsc4I CCNNNNNNNGG 6 cut(s) 138, 152, 266, 503, 506, 887
Bse1I ACTGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 788
BseBI CCWGG 1 cut(s) 965
BseGI GGATG 2 cut(s) 133, 572
BseLI CCNNNNNNNGG 6 cut(s) 138, 152, 266, 503, 506, 887
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 5 cut(s) 447, 629, 749, 764, 804
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 5 cut(s) 56, 171, 489, 665, 950
BseXI GCAGC 9 cut(s) 16, 319, 426, 610, 649, 652, 721, 724, 935
Bsh1236I CGCG 1 cut(s) 835
BshFI GGCC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 17
BslI CCNNNNNNNGG 6 cut(s) 138, 152, 266, 503, 506, 887
BsmAI GTCTC 2 cut(s) 383, 445
BsnI GGCC 1 cut(s) 496
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 2 cut(s) 211, 824
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 5 cut(s) 446, 628, 748, 763, 805
BspFNI CGCG 1 cut(s) 835
BspLI GGNNCC 4 cut(s) 143, 191, 514, 786
BspPI GGATC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 788
BsrI ACTGG 1 cut(s) 480
BssMI GATC 1 cut(s) 460
BssNAI GTATAC 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 965
Bst4CI ACNGT 2 cut(s) 165, 660
Bst6I CTCTTC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 5 cut(s) 433, 615, 735, 750, 813
BstENI CCTNNNNNAGG 2 cut(s) 150, 501
BstF5I GGATG 2 cut(s) 133, 572
BstFNI CGCG 1 cut(s) 835
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 2 cut(s) 383, 445
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 4 cut(s) 598, 706, 823, 832
BstNI CCWGG 1 cut(s) 965
BstSCI CCNGG 1 cut(s) 963
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 9 cut(s) 16, 319, 426, 610, 649, 652, 721, 724, 935
BstV2I GAAGAC 1 cut(s) 60
BstZ17I GTATAC 1 cut(s) 327
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 496
BtsCI GGATG 2 cut(s) 133, 572
Cac8I GCNNGC 1 cut(s) 439
CaiI CAGNNNCTG 2 cut(s) 715, 764
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 3 cut(s) 189, 269, 512
Csp6I GTAC 2 cut(s) 622, 649
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 1 cut(s) 563
CviJI RGCY 9 cut(s) 144, 417, 437, 496, 581, 687, 715, 787, 963
CviKI_1 RGCY 9 cut(s) 144, 417, 437, 496, 581, 687, 715, 787, 963
CviQI GTAC 2 cut(s) 622, 649
DdeI CTNAG 5 cut(s) 433, 615, 735, 750, 813
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DraI TTTAAA 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 3 cut(s) 189, 269, 512
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 17
EcoNI CCTNNNNNAGG 2 cut(s) 150, 501
EcoO109I RGGNCCY 2 cut(s) 189, 512
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 1 cut(s) 566
FatI CATG 1 cut(s) 562
FauNDI CATATG 1 cut(s) 645
FblI GTMKAC 1 cut(s) 326
FokI GGATG 2 cut(s) 140, 579
FriOI GRGCYC 1 cut(s) 146
GlaI GCGC 1 cut(s) 834
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 496
HhaI GCGC 1 cut(s) 835
Hin1II CATG 1 cut(s) 566
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 7 cut(s) 24, 67, 453, 538, 718, 877, 918
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 3 cut(s) 327, 631, 850
Hpy188I TCNGA 5 cut(s) 372, 532, 553, 814, 989
Hpy188III TCNNGA 2 cut(s) 272, 292
Hpy8I GTNNAC 3 cut(s) 327, 631, 850
HpyAV CCTTC 4 cut(s) 156, 689, 786, 819
HpyCH4III ACNGT 2 cut(s) 165, 660
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 7 cut(s) 32, 379, 557, 700, 742, 772, 805
HpyF10VI GCNNNNNNNGC 4 cut(s) 598, 706, 823, 832
HpyF3I CTNAG 5 cut(s) 433, 615, 735, 750, 813
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 1 cut(s) 566
HspAI GCGC 1 cut(s) 833
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 3 cut(s) 141, 586, 784
Lsp1109I GCAGC 9 cut(s) 16, 319, 426, 610, 649, 652, 721, 724, 935
LweI GCATC 6 cut(s) 118, 262, 366, 544, 770, 820
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 482, 660
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 6 cut(s) 58, 65, 259, 385, 738, 952
MfeI CAATTG 4 cut(s) 136, 194, 542, 818
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 9 cut(s) 118, 136, 194, 297, 363, 425, 542, 610, 818
MlyI GAGTC 2 cut(s) 447, 547
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 364
MseI TTAA 3 cut(s) 116, 470, 869
MspA1I CMGCKG 1 cut(s) 715
MspR9I CCNGG 1 cut(s) 965
MunI CAATTG 4 cut(s) 136, 194, 542, 818
MvaI CCWGG 1 cut(s) 965
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 4 cut(s) 598, 706, 823, 832
NdeI CATATG 1 cut(s) 645
NdeII GATC 1 cut(s) 460
NlaIII CATG 1 cut(s) 566
NlaIV GGNNCC 4 cut(s) 143, 191, 514, 786
PaeR7I CTCGAG 1 cut(s) 17
PceI AGGCCT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 5 cut(s) 24, 67, 718, 877, 918
PflFI GACNNNGTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 138
PleI GAGTC 2 cut(s) 447, 546
PpsI GAGTC 2 cut(s) 447, 546
PpuMI RGGWCCY 2 cut(s) 189, 512
Psp1406I AACGTT 1 cut(s) 100
Psp5II RGGWCCY 2 cut(s) 189, 512
Psp6I CCWGG 1 cut(s) 963
PspGI CCWGG 1 cut(s) 963
PspN4I GGNNCC 4 cut(s) 143, 191, 514, 786
PspPI GGNCC 3 cut(s) 189, 269, 512
PspPPI RGGWCCY 2 cut(s) 189, 512
PspXI VCTCGAGB 1 cut(s) 17
PstNI CAGNNNCTG 2 cut(s) 715, 764
PsyI GACNNNGTC 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 715
RsaI GTAC 2 cut(s) 623, 650
RsaNI GTAC 2 cut(s) 622, 649
SaqAI TTAA 3 cut(s) 116, 470, 869
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 3 cut(s) 189, 269, 512
ScaI AGTACT 1 cut(s) 623
SchI GAGTC 2 cut(s) 447, 547
ScrFI CCNGG 1 cut(s) 965
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 6 cut(s) 118, 262, 366, 544, 770, 820
Sfr274I CTCGAG 1 cut(s) 17
SinI GGWCC 3 cut(s) 189, 269, 512
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 6 cut(s) 17, 150, 501, 911, 932, 958
SmoI CTYRAG 6 cut(s) 17, 150, 501, 911, 932, 958
Sse9I AATT 9 cut(s) 118, 136, 194, 297, 363, 425, 542, 610, 818
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 2 cut(s) 211, 824
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 963
TaaI ACNGT 2 cut(s) 165, 660
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 18, 608
TasI AATT 9 cut(s) 118, 136, 194, 297, 363, 425, 542, 610, 818
TatI WGTACW 1 cut(s) 621
TauI GCSGC 2 cut(s) 214, 826
TfiI GAWTC 5 cut(s) 24, 67, 718, 877, 918
Tru1I TTAA 3 cut(s) 116, 470, 869
Tru9I TTAA 3 cut(s) 116, 470, 869
TseI GCWGC 9 cut(s) 29, 332, 414, 598, 637, 640, 709, 712, 923
TspDTI ATGAA 2 cut(s) 369, 488
Tth111I GACNNNGTC 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 3 cut(s) 189, 269, 512
XagI CCTNNNNNAGG 2 cut(s) 150, 501
XapI RAATTY 3 cut(s) 118, 363, 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 364
ZrmI AGTACT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.