Rorug05G0442900

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000315
Physical Location & Seq
Forward (+)
61473386 .. 61474260
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0442900.1

Sequence Viewer

Length: 369 bp
ATGGCTAACTGTAAGCGAATGGCGGTCGTTGACTCCTGCGCCGCCGACGACCACTCTCCGTCCAAGAGAAAGAAAATCCTCATCGCTTCGCCTCCAGAGACAATGCTTCATCATCATCAGCTCGGCGATTCTCGCAGTTTCAAGCTCCTTCGTTCCACGAGTTGCTTCTCCGACGAGCATTCTCCGCCTTCTTCCTCTTGCTGCTCCAGAAATGAACTCAACGACGTCGTTCTCGTCAGAGCGCCGCTTCTGGATCTGGAGGCCGACAGTTGTGAAATCATCTACACTGCGCCTGTTCCATTCGCTTATAGATCTGAATCTGAATTCTTTCGGTTTGTCAAAAATCAGCAGATAAAACGACGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

8.59

Isoelectric Point (pI)

90.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
AciI CCGC 4 cut(s) 23, 42, 185, 245
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 323
AcyI GRCGYC 2 cut(s) 225, 361
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 2 cut(s) 121, 145
AluI AGCT 2 cut(s) 121, 145
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 261
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 3 cut(s) 41, 244, 292
BauI CACGAG 1 cut(s) 157
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 245
BglII AGATCT 1 cut(s) 311
BisI GCNGC 3 cut(s) 42, 202, 245
BlsI GCNGC 3 cut(s) 43, 203, 246
BpmI CTGGAG 3 cut(s) 78, 190, 278
BsaBI GATNNNNATC 1 cut(s) 316
BsaHI GRCGYC 2 cut(s) 225, 361
Bse8I GATNNNNATC 1 cut(s) 316
BseJI GATNNNNATC 1 cut(s) 316
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 253, 311
BspACI CCGC 4 cut(s) 23, 42, 185, 245
BspANI GGCC 1 cut(s) 263
BspPI GGATC 1 cut(s) 261
BssMI GATC 2 cut(s) 253, 311
BssNI GRCGYC 2 cut(s) 225, 361
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 11, 269
BstACI GRCGYC 2 cut(s) 225, 361
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 3 cut(s) 41, 244, 292
BstKTI GATC 2 cut(s) 256, 314
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 253, 311
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 132, 184
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 253, 311
BstYI RGATCY 2 cut(s) 253, 311
BsuRI GGCC 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
CfoI GCGC 3 cut(s) 41, 244, 292
CviJI RGCY 4 cut(s) 5, 121, 145, 263
CviKI_1 RGCY 4 cut(s) 5, 121, 145, 263
DpnI GATC 2 cut(s) 255, 313
DpnII GATC 2 cut(s) 253, 311
EciI GGCGGA 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 323
FaiI YATR 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 42, 202, 245
Fsp4HI GCNGC 3 cut(s) 42, 202, 245
GlaI GCGC 3 cut(s) 40, 243, 291
GluI GCNGC 3 cut(s) 42, 202, 245
GsuI CTGGAG 3 cut(s) 78, 190, 278
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 263
HhaI GCGC 3 cut(s) 41, 244, 292
Hin1I GRCGYC 2 cut(s) 225, 361
Hin6I GCGC 3 cut(s) 39, 242, 290
HinP1I GCGC 3 cut(s) 39, 242, 290
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 32, 128, 317
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 4 cut(s) 172, 239, 316, 322
Hpy188III TCNNGA 4 cut(s) 95, 207, 251, 257
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 5 cut(s) 50, 176, 227, 230, 363
HpyAV CCTTC 2 cut(s) 158, 198
HpyCH4III ACNGT 2 cut(s) 11, 269
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 184
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 2 cut(s) 225, 361
HspAI GCGC 3 cut(s) 39, 242, 290
Kzo9I GATC 2 cut(s) 253, 311
LmnI GCTCC 2 cut(s) 150, 209
LpnPI CCDG 6 cut(s) 49, 108, 220, 236, 242, 306
Lsp1109I GCAGC 1 cut(s) 188
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 255, 313
MboI GATC 2 cut(s) 253, 311
MboII GAAGA 1 cut(s) 183
MflI RGATCY 2 cut(s) 253, 311
MluCI AATT 1 cut(s) 323
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 4 cut(s) 89, 102, 205, 253
MroXI GAANNNNTTC 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 132, 184
NdeII GATC 2 cut(s) 253, 311
NmeAIII GCCGAG 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 128, 317
PkrI GCNGC 3 cut(s) 43, 203, 246
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PsuI RGATCY 2 cut(s) 253, 311
SatI GCNGC 3 cut(s) 42, 202, 245
Sau3AI GATC 2 cut(s) 253, 311
SchI GAGTC 1 cut(s) 26
SetI ASST 3 cut(s) 123, 147, 228
Sse9I AATT 1 cut(s) 323
SsiI CCGC 4 cut(s) 23, 42, 185, 245
TaaI ACNGT 2 cut(s) 11, 269
TaiI ACGT 1 cut(s) 228
TasI AATT 1 cut(s) 323
TauI GCSGC 2 cut(s) 44, 247
TfiI GAWTC 2 cut(s) 128, 317
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 98, 228
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 327
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.