Rmu_co8127406.1_g000001

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8127406.1
OG0000315
Physical Location & Seq
Reverse (-)
2 .. 626
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8127406.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
gattgcatgaactcaagaaaattgctgttaggttcgaggaaaagatttatactgctgccacaagtcagtcagattatctacggaaaatttctctgaagatgctcactatggaggccaagtctcagaccaaaatgcccaattctttacaatccaactctgctgtagggtcttctggtatgcaacctcaagtcaccaatcaaggacaactcttatcagaaaacattcaaagtaacattccacctgctggagttcaaaattctgctggcttatcatctgcactaccccctacctctgggctcagcttatcatctgtactagctcctaccccggcactaaatacgtctgccttattatctgcgctaccccctgcccctcgtagaaatatgcctgccagcttatcatctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

134

Amino Acids

14.05

Weight (kDa)

9.9

Isoelectric Point (pI)

68.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 244
AcsI RAATTY 2 cut(s) 86, 255
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 244, 292
AgsI TTSAA 2 cut(s) 226, 253
AluBI AGCT 3 cut(s) 302, 319, 395
AluI AGCT 3 cut(s) 302, 319, 395
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 2 cut(s) 86, 255
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 183
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 249
BisI GCNGC 1 cut(s) 56
BlpI GCTNAGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 266
Bpu1102I GCTNAGC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 292
BseDI CCNNGG 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 244, 292
BseMII CTCAG 2 cut(s) 136, 312
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 244, 292
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 299
Bsp1720I GCTNAGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 2 cut(s) 135, 311
BspMI ACCTGC 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 264, 389, 393
BstDEI CTNAG 2 cut(s) 122, 298
BstHHI GCGC 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 115
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 264, 389, 393
CfoI GCGC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 115, 266, 297, 302, 319, 395
CviKI_1 RGCY 6 cut(s) 115, 266, 297, 302, 319, 395
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 122, 298
Eco24I GRGCYC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 1 cut(s) 10
FaiI YATR 5 cut(s) 8, 50, 109, 178, 385
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 316
GlaI GCGC 1 cut(s) 359
GluI GCNGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 328
HhaI GCGC 1 cut(s) 360
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HpaII CCGG 1 cut(s) 328
HphI GGTGA 1 cut(s) 183
Hpy188I TCNGA 4 cut(s) 72, 95, 125, 216
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 6, 180, 277
HpyF3I CTNAG 2 cut(s) 122, 298
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 8 cut(s) 158, 230, 248, 254, 278, 341, 380, 401
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 189, 229
MboII GAAGA 2 cut(s) 108, 161
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 4 cut(s) 20, 86, 138, 255
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 5 cut(s) 30, 105, 194, 300, 383
MroXI GAANNNNTTC 1 cut(s) 221
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 328
NciI CCSGG 1 cut(s) 328
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 1 cut(s) 57
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SatI GCNGC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 299
SetI ASST 8 cut(s) 34, 186, 243, 292, 304, 321, 343, 397
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 13, 185
SmoI CTYRAG 2 cut(s) 13, 185
Sse9I AATT 4 cut(s) 20, 86, 138, 255
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 35
TasI AATT 4 cut(s) 20, 86, 138, 255
TatI WGTACW 1 cut(s) 312
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 244
XapI RAATTY 2 cut(s) 86, 255
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.