RLG00000036595

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000315
Physical Location & Seq
Forward (+)
82291164 .. 82293373
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036595

Sequence Viewer

Length: 1248 bp
ATGGATAACAACAATGGGAGTCCTCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAAAAGCCAATTCCAGGCAGATTCGCGGCAAAGAATTGTCAATAAGATAATGGATACATTGAAGAGGCATCTTCCTTTCTCCGGTCAAGAGGGATTGCATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATACTGCCGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTGAAGATGCCCACTATGGAGACCAAGTCTCAGACCACAATGGCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATGCAACCTCAAGTCACCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCACCTGCTGGAGTTCCAAATTCTGCTGGCTTATCATCTGCACTACCTCCTACCTCCGGGCCACAACAGCAAATATTGCCCCCACAGCATCAACCGCAACAATTAATAGCCCAGACTGGGAATACAAATGGAGATGATTGGAAAGAGGAGGTCTATCAAAAGTATCAAAAGAAGATGCAGAAGCTGTATATATTTCAACATGATGTACAACGACAAAAAGAGCTGCAGCAGCAGCATCTACCTGGACAATTGCAGCCCGAGCTACACCAAATCAGTATTGTTAACGACGTCAACACGAATGTCCTGTCATCATCACATAATGGGATTAACATGTTGCAGGCAAACGTTATTCCACCCAGTATTCTTCAGAAACCACAAGTATATCAGAATCACCTCCAAATCCAGCTACTACATCAGCGACAGATGCAGCTGCAGTTGATGGAGAAGCAGCAGAGAATTCAGCAACAGCAACAGCAGCAGGTGCCTGGACTGTCACAGGCACACCAACTACCACAGCTTCACCAAATCAGTGTTGTTAAAGACATTAACGTGGATGCCTCGTCATCACAAACTGGGAGTAGTATGCTGCAGGCAAACATTGATACCCCTCAACCAAATTCTATTAGTGTTGATAACAAGCATCTGAAGCAAGATCTGGAGCAGAAAATGTTTCAGAATCAACTAAAGCAACCATATCAGCAGCAATGGATGCAGAAGCAGCAGATTCTTCAAGAAATGCAACAGCTGCAGATACAAAAACTACAACAGCAAGCAAAGCAGCAGCTGCATCATATTTATGTTATATATCTCATCTTTCTCACCATTCTGTTGGGTGCTGCCTTTTTCGGGACTGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

416

Amino Acids

47.1

Weight (kDa)

8.97

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 98 2.2e-34 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 400, 856
AatII GACGTC 1 cut(s) 678
Acc36I ACCTGC 2 cut(s) 400, 856
AccB1I GGYRCC 1 cut(s) 868
AccB7I CCANNNNNTGG 1 cut(s) 395
AccII CGCG 1 cut(s) 88
AciI CCGC 3 cut(s) 88, 210, 482
AclI AACGTT 1 cut(s) 732
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 240, 406, 843, 1003
AcuI CTGAAG 3 cut(s) 269, 737, 1052
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 504, 1233
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 4 cut(s) 124, 377, 584, 1118
AjnI CCWGG 3 cut(s) 75, 628, 871
AluBI AGCT 8 cut(s) 571, 610, 649, 793, 817, 904, 1132, 1171
AluI AGCT 8 cut(s) 571, 610, 649, 793, 817, 904, 1132, 1171
Alw26I GTCTC 2 cut(s) 260, 279
AlwNI CAGNNNCTG 2 cut(s) 571, 1171
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 2 cut(s) 288, 446
ApoI RAATTY 4 cut(s) 240, 406, 843, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
AseI ATTAAT 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 334, 770, 899, 1198
AvaI CYCGRG 1 cut(s) 644
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 868
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 1 cut(s) 820
BciT130I CCWGG 3 cut(s) 77, 630, 873
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 260, 279
BfmI CTRYAG 4 cut(s) 611, 818, 974, 1133
BfuAI ACCTGC 2 cut(s) 400, 856
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 1039
Bme1390I CCNGG 4 cut(s) 77, 445, 630, 873
BmeT110I CYCGRG 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 4 cut(s) 77, 445, 630, 873
BmrI ACTGGG 3 cut(s) 513, 738, 969
BmuI ACTGGG 3 cut(s) 513, 738, 969
BpiI GAAGAC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 2 cut(s) 417, 1064
BpuEI CTTGAG 3 cut(s) 12, 152, 321
BpuMI CCSGG 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 675
BsaI GGTCTC 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 504, 1233
Bse1I ACTGG 4 cut(s) 508, 744, 964, 1243
Bse3DI GCAATG 2 cut(s) 51, 1097
BseBI CCWGG 3 cut(s) 77, 630, 873
BseGI GGATG 3 cut(s) 55, 946, 1101
BseLI CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 504, 1233
BseMI GCAATG 2 cut(s) 51, 1097
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 4 cut(s) 508, 744, 964, 1243
BseRI GAGGAG 2 cut(s) 15, 548
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 290, 448
BshNI GGYRCC 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 2 cut(s) 144, 444
BslI CCNNNNNNNGG 8 cut(s) 29, 32, 76, 143, 395, 443, 504, 1233
BsmAI GTCTC 2 cut(s) 260, 279
BsnI GGCC 2 cut(s) 290, 448
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 1 cut(s) 1039
BspACI CCGC 3 cut(s) 88, 210, 482
BspANI GGCC 2 cut(s) 290, 448
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 870
BspMAI CTGCAG 4 cut(s) 615, 822, 978, 1137
BspMI ACCTGC 2 cut(s) 400, 856
BspT107I GGYRCC 1 cut(s) 868
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 51, 1097
BsrGI TGTACA 1 cut(s) 592
BsrI ACTGG 4 cut(s) 508, 744, 964, 1243
BssMI GATC 1 cut(s) 1039
BssNI GRCGYC 1 cut(s) 675
Bst2UI CCWGG 3 cut(s) 77, 630, 873
Bst4CI ACNGT 1 cut(s) 879
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 675
BstAPI GCANNNNNTGC 6 cut(s) 50, 463, 868, 1096, 1132, 1171
BstAUI TGTACA 1 cut(s) 592
BstC8I GCNNGC 5 cut(s) 42, 415, 726, 978, 1158
BstDEI CTNAG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 55, 946, 1101
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 1 cut(s) 1042
BstMAI GTCTC 2 cut(s) 260, 279
BstMBI GATC 1 cut(s) 1039
BstNI CCWGG 3 cut(s) 77, 630, 873
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 4 cut(s) 75, 443, 628, 871
BstSFI CTRYAG 4 cut(s) 611, 818, 974, 1133
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 1039
BstXI CCANNNNNNTGG 1 cut(s) 1216
BstYI RGATCY 1 cut(s) 1039
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 290, 448
BtsCI GGATG 3 cut(s) 55, 946, 1101
BtsIMutI CAGTG 1 cut(s) 922
BveI ACCTGC 2 cut(s) 400, 856
Cac8I GCNNGC 5 cut(s) 42, 415, 726, 978, 1158
CaiI CAGNNNCTG 2 cut(s) 571, 1171
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 593
CviAII CATG 3 cut(s) 161, 587, 718
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 1041
DpnII GATC 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 260
Eco57I CTGAAG 3 cut(s) 269, 737, 1052
Eco88I CYCGRG 1 cut(s) 644
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 843
EcoRII CCWGG 3 cut(s) 75, 628, 871
FaeI CATG 3 cut(s) 164, 590, 721
FatI CATG 3 cut(s) 160, 586, 717
FokI GGATG 3 cut(s) 62, 953, 1108
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 2 cut(s) 417, 1064
HaeIII GGCC 2 cut(s) 290, 448
HapII CCGG 2 cut(s) 144, 444
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 3 cut(s) 164, 590, 721
HincII GTYRAC 2 cut(s) 670, 679
HindII GTYRAC 2 cut(s) 670, 679
HinfI GANTC 5 cut(s) 19, 83, 775, 1063, 1111
HpaI GTTAAC 1 cut(s) 670
HpaII CCGG 2 cut(s) 144, 444
HphI GGTGA 4 cut(s) 334, 770, 899, 1198
Hpy166II GTNNAC 2 cut(s) 670, 679
Hpy188I TCNGA 8 cut(s) 226, 249, 279, 367, 756, 774, 1032, 1062
Hpy188III TCNNGA 5 cut(s) 149, 169, 1043, 1118, 1234
Hpy8I GTNNAC 2 cut(s) 670, 679
Hpy99I CGWCG 1 cut(s) 677
HpyCH4III ACNGT 1 cut(s) 879
HpyCH4IV ACGT 3 cut(s) 675, 732, 936
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 3 cut(s) 675, 732, 936
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 3 cut(s) 164, 590, 721
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 1 cut(s) 1039
LmnI GCTCC 1 cut(s) 1045
MaeII ACGT 3 cut(s) 675, 732, 936
MaeIII GTNAC 3 cut(s) 340, 380, 879
MalI GATC 1 cut(s) 1041
MboI GATC 1 cut(s) 1039
MboII GAAGA 7 cut(s) 125, 136, 262, 312, 571, 743, 1106
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 1039
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 5 cut(s) 491, 669, 714, 924, 933
MslI CAYNNNNRTG 2 cut(s) 935, 1182
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 3 cut(s) 817, 1132, 1171
MspI CCGG 2 cut(s) 144, 444
MspR9I CCNGG 4 cut(s) 77, 445, 630, 873
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 3 cut(s) 77, 630, 873
MvnI CGCG 1 cut(s) 88
NciI CCSGG 1 cut(s) 445
NdeII GATC 1 cut(s) 1039
NlaIII CATG 3 cut(s) 164, 590, 721
NlaIV GGNNCC 1 cut(s) 870
NmuCI GTSAC 2 cut(s) 340, 879
NspI RCATGY 1 cut(s) 721
PaqCI CACCTGC 2 cut(s) 400, 856
PciI ACATGT 1 cut(s) 717
PfeI GAWTC 4 cut(s) 83, 775, 1063, 1111
PflFI GACNNNGTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 395
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PscI ACATGT 1 cut(s) 717
PshBI ATTAAT 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 732
Psp6I CCWGG 3 cut(s) 75, 628, 871
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 3 cut(s) 75, 628, 871
PspN4I GGNNCC 1 cut(s) 870
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 4 cut(s) 615, 822, 978, 1137
PstNI CAGNNNCTG 2 cut(s) 571, 1171
PsuI RGATCY 1 cut(s) 1039
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 3 cut(s) 817, 1132, 1171
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 2 cut(s) 935, 1182
SaqAI TTAA 5 cut(s) 491, 669, 714, 924, 933
Sau3AI GATC 1 cut(s) 1039
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 4 cut(s) 77, 445, 630, 873
SfcI CTRYAG 4 cut(s) 611, 818, 974, 1133
SmiMI CAYNNNNRTG 2 cut(s) 935, 1182
SmlI CTYRAG 3 cut(s) 27, 167, 336
SmoI CTYRAG 3 cut(s) 27, 167, 336
SsiI CCGC 3 cut(s) 88, 210, 482
SspI AATATT 1 cut(s) 462
StyD4I CCNGG 4 cut(s) 75, 443, 628, 871
TaaI ACNGT 1 cut(s) 879
TaiI ACGT 3 cut(s) 678, 735, 939
TatI WGTACW 1 cut(s) 592
TauI GCSGC 2 cut(s) 91, 212
TfiI GAWTC 4 cut(s) 83, 775, 1063, 1111
Tru1I TTAA 5 cut(s) 491, 669, 714, 924, 933
Tru9I TTAA 5 cut(s) 491, 669, 714, 924, 933
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 2 cut(s) 340, 879
Tsp45I GTSAC 2 cut(s) 340, 879
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 1 cut(s) 922
Tth111I GACNNNGTC 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 395
VspI ATTAAT 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 4 cut(s) 240, 406, 843, 1003
XceI RCATGY 1 cut(s) 721
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.