Rh1AG189900

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000315
Physical Location & Seq
Reverse (-)
36154307 .. 36155487
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG189900.1

Sequence Viewer

Length: 252 bp
ATGAAGAATCACTTTTATCAACCAAACTTAGCAACTTGTGTAGAATATTTTAGCTCTTTTGGCAGGGTTTCTTTGAACTTGGTATTCGATATTCTATTGTTTTCTTTGACATTTTTTGGGTTGGTTAGGTTGATGGATAACAACAATGGGAGTCCTCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGTGCCAATTGCAGGTGGATTCGCGGCAAAGAATTGTCATTAAGATGTACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

6.52

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 1 cut(s) 220
AciI CCGC 1 cut(s) 220
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 161, 164, 208
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
BanI GGYRCC 1 cut(s) 198
BccI CCATC 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpuEI CTTGAG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 164, 208
Bse3DI GCAATG 1 cut(s) 183
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 161, 164, 208
BseMI GCAATG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 161, 164, 208
Bsp1407I TGTACA 1 cut(s) 243
BspACI CCGC 1 cut(s) 220
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 60, 182
BstUI CGCG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 187
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 244
CviJI RGCY 2 cut(s) 54, 172
CviKI_1 RGCY 2 cut(s) 54, 172
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 159
FalI AAGNNNNNCTT 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
HinfI GANTC 3 cut(s) 7, 151, 215
HpyCH4V TGCA 3 cut(s) 176, 185, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 182
HpyF3I CTNAG 1 cut(s) 28
LpnPI CCDG 4 cut(s) 49, 171, 186, 194
LweI GCATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 203
MluCI AATT 2 cut(s) 203, 228
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 3 cut(s) 165, 168, 189
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 239
MunI CAATTG 1 cut(s) 203
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 60, 182
NlaIV GGNNCC 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 7, 215
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 200
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 221
SchI GAGTC 1 cut(s) 160
SetI ASST 5 cut(s) 56, 131, 166, 200, 213
SfaNI GCATC 1 cut(s) 172
SgeI CNNG 8 cut(s) 48, 76, 91, 173, 185, 198, 221, 231
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 2 cut(s) 203, 228
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 47
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 203, 228
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 2 cut(s) 7, 215
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.