Rroxscaffold_1G00005870

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000315
Physical Location & Seq
Reverse (-)
7913555 .. 7919744
6190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005870.1

Sequence Viewer

Length: 1032 bp
ATGCAGAAGTCCACTAGGGGTACAATGGAAAGAAAAACAATATTGGGTCCAAACATAGAAGCCCAAGAAACAGTACAACCTTTGATTAGTGCTGAATCGATTTTGATGGATACCAATATCAACAGTGATCAGAGGCCTCCGCAGGGTGGAGAAGCTTCGCATGACGCCGGCGATTGGAGGATGTACTTGATGCCAGATTCAAGGCAAATAATTGTTAACAAGATACTTGATACGTTGAAGAGGCATCTCCCCTTCTCTGGCCAAGAGGGGTTACTTGAACTGAAGAGAATTGGTTTAAGGTTTGAGGAAAAGGTGTATGCTACTGCATCAAGCCAGACTGTTGGATTGGTTGATTTAATGGATATCAATAATGAGAGGCCTCCAGAAGTTGGAGGACCCTTTAGAGAAAATTGGTTTTGCCATGTTTCTCAAACGAGCAGAGGTTTATTTGCACTGGGCCTCGCGCTCGAGCAGATTCATTCAATGTTGAAGCGCTCGAGGTCCCTGGCGCTCAGTGAAATGAATATGAGACACGTTGAAGAGGCATTTTGGGATTACTCAAAATTAAGAGTTGGGCTGCAAGGTTTGTGGAAAAAGTGTATGCTACTGCATCAAGCCAGATTTTCAGGTTTGTTTGATTTAATGGATACCAATAGTAGGAGGCCTCCTCAAGTCCAAGGACCCTCATCGGACACACTGGATTGGAGGAGTTGTTTTCAGCCAGATTCACGACGTAGAATTGTCAACAAGATGCAAGTATATACGCATGGGAAGAATCAAAGCTATAAACCATGGCCTCATACCATGAGAACTGATGTGGTAAAGAGAAGCCCCTCTCATAGTCAAATGGGATCACCAGAACTCGAGAGGATCACTGTAACATTTGAGGAGAAGTTATATACTGTTGCTTTATCCCTCAAGCCAGAGTATCTACGAAAACTTTCTCTGAAGATGCTCGTCTGGGACACCAAGCTTTGTGGCCCCTCCAACCTGAAACGGCATCGTGTCGTTGCTTTTGGCCCAGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

343

Amino Acids

39.39

Weight (kDa)

9.37

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 57 - 113 6.1e-17 KIX domain
KIX_2 PF16987 234 - 324 3e-08 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 464
AciI CCGC 1 cut(s) 140
AclWI GGATC 2 cut(s) 859, 878
AcoI YGGCCR 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 302, 968
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 22, 75, 185
AfeI AGCGCT 1 cut(s) 494
AfiI CCNNNNNNNGG 6 cut(s) 143, 146, 174, 257, 389, 657
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 6 cut(s) 201, 238, 278, 483, 490, 539
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 3 cut(s) 155, 783, 973
AluI AGCT 3 cut(s) 155, 783, 973
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 2 cut(s) 859, 878
Ama87I CYCGRG 3 cut(s) 467, 496, 863
Aor51HI AGCGCT 1 cut(s) 494
AoxI GGCC 8 cut(s) 134, 259, 377, 457, 662, 794, 979, 1018
ApeKI GCWGC 1 cut(s) 577
Asp700I GAANNNNTTC 1 cut(s) 940
AspLEI GCGC 3 cut(s) 466, 495, 511
AspS9I GGNCC 7 cut(s) 47, 395, 457, 501, 680, 980, 1019
AsuHPI GGTGA 1 cut(s) 846
AvaI CYCGRG 3 cut(s) 467, 496, 863
AvaII GGWCC 4 cut(s) 47, 395, 501, 680
BalI TGGCCA 1 cut(s) 261
BbvI GCAGC 1 cut(s) 564
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 1013
BciT130I CCWGG 1 cut(s) 506
BciVI GTATCC 2 cut(s) 103, 640
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 2 cut(s) 496, 512
BfuI GTATCC 2 cut(s) 103, 640
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
Bme1390I CCNGG 1 cut(s) 506
Bme18I GGWCC 4 cut(s) 47, 395, 501, 680
BmeT110I CYCGRG 3 cut(s) 467, 496, 863
BmgT120I GGNCC 7 cut(s) 47, 395, 457, 501, 680, 980, 1019
BmiI GGNNCC 5 cut(s) 48, 397, 503, 682, 982
BmrFI CCNGG 1 cut(s) 506
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 7 cut(s) 180, 253, 335, 619, 741, 942, 1009
BmuI ACTGGG 1 cut(s) 464
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 654, 902
Bsa29I ATCGAT 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 504, 676, 791
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 6 cut(s) 143, 146, 174, 257, 389, 657
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 459, 702
BseBI CCWGG 1 cut(s) 506
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 504, 676, 791
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 6 cut(s) 143, 146, 174, 257, 389, 657
BseMII CTCAG 1 cut(s) 526
BseNI ACTGG 2 cut(s) 459, 702
BseRI GAGGAG 3 cut(s) 657, 721, 902
BseXI GCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 8 cut(s) 136, 261, 379, 459, 664, 796, 981, 1020
BshVI ATCGAT 1 cut(s) 98
BsiHKCI CYCGRG 3 cut(s) 467, 496, 863
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 487, 977
BslI CCNNNNNNNGG 6 cut(s) 143, 146, 174, 257, 389, 657
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 487, 977
BsnI GGCC 8 cut(s) 136, 261, 379, 459, 664, 796, 981, 1020
BsoBI CYCGRG 3 cut(s) 467, 496, 863
Bsp143I GATC 3 cut(s) 127, 851, 870
Bsp19I CCATGG 1 cut(s) 791
BspACI CCGC 1 cut(s) 140
BspANI GGCC 8 cut(s) 136, 261, 379, 459, 664, 796, 981, 1020
BspCNI CTCAG 1 cut(s) 525
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 5 cut(s) 48, 397, 503, 682, 982
BspPI GGATC 2 cut(s) 859, 878
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 459, 702
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 504, 676, 791
BssMI GATC 3 cut(s) 127, 851, 870
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 676, 791
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 5 cut(s) 73, 125, 340, 877, 904
Bst6I CTCTTC 3 cut(s) 233, 278, 534
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 512
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 2 cut(s) 496, 512
BstHHI GCGC 3 cut(s) 466, 495, 511
BstKTI GATC 3 cut(s) 130, 854, 873
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 3 cut(s) 127, 851, 870
BstNI CCWGG 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 504
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 564
BstXI CCANNNNNNTGG 1 cut(s) 341
Bsu15I ATCGAT 1 cut(s) 98
BsuI GTATCC 2 cut(s) 103, 640
BsuRI GGCC 8 cut(s) 136, 261, 379, 459, 664, 796, 981, 1020
BsuTUI ATCGAT 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 5 cut(s) 130, 452, 520, 695, 873
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 3 cut(s) 466, 495, 511
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 7 cut(s) 47, 395, 457, 501, 680, 980, 1019
ClaI ATCGAT 1 cut(s) 98
CseI GACGC 1 cut(s) 173
Csp6I GTAC 3 cut(s) 21, 74, 184
CspCI CAANNNNNGTGG 4 cut(s) 569, 604, 958, 993
CviAII CATG 5 cut(s) 161, 422, 767, 792, 805
CviQI GTAC 3 cut(s) 21, 74, 184
DdeI CTNAG 1 cut(s) 512
DpnI GATC 3 cut(s) 129, 853, 872
DpnII GATC 3 cut(s) 127, 851, 870
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 3 cut(s) 233, 278, 534
EarI CTCTTC 3 cut(s) 233, 278, 534
Eco130I CCWWGG 2 cut(s) 676, 791
Eco147I AGGCCT 3 cut(s) 136, 379, 664
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 4 cut(s) 47, 395, 501, 680
Eco47III AGCGCT 1 cut(s) 494
Eco57I CTGAAG 2 cut(s) 302, 968
Eco88I CYCGRG 3 cut(s) 467, 496, 863
EcoO109I RGGNCCY 3 cut(s) 395, 501, 680
EcoRII CCWGG 1 cut(s) 504
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 676, 791
ErhI CCWWGG 2 cut(s) 676, 791
FaeI CATG 5 cut(s) 164, 425, 770, 795, 808
FaqI GGGAC 2 cut(s) 487, 977
FatI CATG 5 cut(s) 160, 421, 766, 791, 804
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 578
FspBI CTAG 1 cut(s) 15
GlaI GCGC 3 cut(s) 465, 494, 510
GluI GCNGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 2 cut(s) 496, 512
HaeIII GGCC 8 cut(s) 136, 261, 379, 459, 664, 796, 981, 1020
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 173
HhaI GCGC 3 cut(s) 466, 495, 511
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 5 cut(s) 164, 425, 770, 795, 808
Hin6I GCGC 3 cut(s) 464, 493, 509
HinP1I GCGC 3 cut(s) 464, 493, 509
HincII GTYRAC 2 cut(s) 217, 745
HindII GTYRAC 2 cut(s) 217, 745
HindIII AAGCTT 2 cut(s) 153, 971
HinfI GANTC 5 cut(s) 95, 197, 475, 725, 775
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 846
Hpy166II GTNNAC 3 cut(s) 12, 217, 745
Hpy188I TCNGA 3 cut(s) 132, 691, 948
Hpy188III TCNNGA 3 cut(s) 383, 729, 865
Hpy8I GTNNAC 3 cut(s) 12, 217, 745
Hpy99I CGWCG 1 cut(s) 735
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 5 cut(s) 73, 125, 340, 877, 904
HpyCH4IV ACGT 3 cut(s) 233, 534, 733
HpyCH4V TGCA 6 cut(s) 4, 326, 452, 580, 610, 754
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 3 cut(s) 233, 534, 733
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 5 cut(s) 164, 425, 770, 795, 808
HspAI GCGC 3 cut(s) 464, 493, 509
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 127
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 127, 851, 870
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 7 cut(s) 180, 253, 335, 619, 741, 942, 1009
MaeI CTAG 1 cut(s) 15
MaeII ACGT 3 cut(s) 233, 534, 733
MaeIII GTNAC 2 cut(s) 270, 877
MalI GATC 3 cut(s) 129, 853, 872
MboI GATC 3 cut(s) 127, 851, 870
MboII GAAGA 5 cut(s) 250, 295, 551, 784, 961
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 5 cut(s) 210, 288, 409, 563, 738
MluNI TGGCCA 1 cut(s) 261
MmeI TCCRAC 3 cut(s) 322, 370, 1011
Mox20I TGGCCA 1 cut(s) 261
MreI CGCCGGCG 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 940
MscI TGGCCA 1 cut(s) 261
MseI TTAA 5 cut(s) 216, 296, 356, 566, 641
Msp20I TGGCCA 1 cut(s) 261
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 506
MvnI CGCG 1 cut(s) 464
NaeI GCCGGC 1 cut(s) 169
NcoI CCATGG 1 cut(s) 791
NdeII GATC 3 cut(s) 127, 851, 870
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 5 cut(s) 164, 425, 770, 795, 808
NlaIV GGNNCC 5 cut(s) 48, 397, 503, 682, 982
PaeR7I CTCGAG 3 cut(s) 467, 496, 863
PceI AGGCCT 3 cut(s) 136, 379, 664
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 940
PfeI GAWTC 5 cut(s) 95, 197, 475, 725, 775
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 1 cut(s) 579
PpuMI RGGWCCY 3 cut(s) 395, 501, 680
Psp5II RGGWCCY 3 cut(s) 395, 501, 680
Psp6I CCWGG 1 cut(s) 504
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 5 cut(s) 48, 397, 503, 682, 982
PspPI GGNCC 7 cut(s) 47, 395, 457, 501, 680, 980, 1019
PspPPI RGGWCCY 3 cut(s) 395, 501, 680
PspXI VCTCGAGB 2 cut(s) 467, 496
RsaI GTAC 3 cut(s) 22, 75, 185
RsaNI GTAC 3 cut(s) 21, 74, 184
SaqAI TTAA 5 cut(s) 216, 296, 356, 566, 641
SatI GCNGC 1 cut(s) 578
Sau3AI GATC 3 cut(s) 127, 851, 870
Sau96I GGNCC 7 cut(s) 47, 395, 457, 501, 680, 980, 1019
ScrFI CCNGG 1 cut(s) 506
SfaNI GCATC 7 cut(s) 180, 253, 335, 619, 741, 942, 1009
Sfr274I CTCGAG 3 cut(s) 467, 496, 863
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 4 cut(s) 47, 395, 501, 680
SlaI CTCGAG 3 cut(s) 467, 496, 863
SmlI CTYRAG 5 cut(s) 467, 496, 669, 863, 917
SmoI CTYRAG 5 cut(s) 467, 496, 669, 863, 917
Sse9I AATT 5 cut(s) 210, 288, 409, 563, 738
SseBI AGGCCT 3 cut(s) 136, 379, 664
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 42
SspMI CTAG 1 cut(s) 15
StuI AGGCCT 3 cut(s) 136, 379, 664
StyD4I CCNGG 1 cut(s) 504
StyI CCWWGG 2 cut(s) 676, 791
TaaI ACNGT 5 cut(s) 73, 125, 340, 877, 904
TaiI ACGT 3 cut(s) 236, 537, 736
TaqI TCGA 4 cut(s) 98, 468, 497, 864
TasI AATT 5 cut(s) 210, 288, 409, 563, 738
TatI WGTACW 2 cut(s) 73, 183
TfiI GAWTC 5 cut(s) 95, 197, 475, 725, 775
Tru1I TTAA 5 cut(s) 216, 296, 356, 566, 641
Tru9I TTAA 5 cut(s) 216, 296, 356, 566, 641
TscAI CASTG 5 cut(s) 130, 459, 520, 702, 880
TseI GCWGC 1 cut(s) 577
TspDTI ATGAA 2 cut(s) 467, 536
TspRI CASTG 5 cut(s) 130, 459, 520, 702, 880
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 4 cut(s) 47, 395, 501, 680
XhoI CTCGAG 3 cut(s) 467, 496, 863
XmnI GAANNNNTTC 1 cut(s) 940
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.