Prupe.6G027700_v2.0.a1

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000315
Physical Location & Seq
Reverse (-)
2162928 .. 2166848
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G027700.7

Sequence Viewer

Length: 816 bp
ATGGATAACAATAATTGGAGGCCTCCTCAAGTTGGAGAACCACCAATTGATGCAGGGGATTGGAGGAGTCAACTGCAGCCAGATTCACGGCAAAGAATTGTCAACAAGATAACGGATACATTGAAGAGGCATCTTCCCTTCTCTGGTCAAGAGGGATTACAGGAAATCAGGAAAATCGCTGTAAGGTTTGAGGAAAAGATTCACACCGCCGCCACCAGCCAATCGGATTATCTCCGGAAAATTTCTCTGAAGATGCTCAGTATGGAGACAAACTCTCAACACAGAATGGCCAATTCTTCACAATCCAACTCTGCTGTAGGTTCTTTTGGTGTGCAACCCCAAGTCCCCTACCAAGGGCAATTACTCTCTATGCAGTTGTCGGCGAATCAGTCTCTAGCACGCCAACAACTATTATCACAGAACATTCCGAATAACATTCCTCCTGCCTCTGGTTTACCCCAGACTCCTATCCCAAATTTGATGGATACCCATAATGAGAGGCTTCTGCAAGGTGGTGAACTGCCAATGGTCGCAGGCAATTGGAGGAGCCAATTGCTGCCAGATTCACGGCGAAGAATTGTTGACAAGATACTTAATACGTTAAAGAGGCATCTTCTCGTCAGTGGTCAAGAGGGAATCGATGAACTCAGGAGAATTGCTGAAAGGTTTGAAGAACGGACTTATGATTCTTCCTCAAGCCAGTCTGATTACCTACGGAGAATTTCTTTAAAGATGCTCACCTTTGAGGCCAAGTATCAATGGACAGCACCTACCGCCGCCCCCTCCAACCTGAAACGGCATCGTGTCTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

272

Amino Acids

30.86

Weight (kDa)

9.98

Isoelectric Point (pI)

71.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 234
AciI CCGC 4 cut(s) 207, 210, 774, 777
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 3 cut(s) 240, 475, 720
AcuI CTGAAG 1 cut(s) 269
AfiI CCNNNNNNNGG 5 cut(s) 32, 143, 353, 354, 449
AgsI TTSAA 2 cut(s) 124, 671
Alw26I GTCTC 2 cut(s) 260, 396
Aor13HI TCCGGA 1 cut(s) 234
AoxI GGCC 3 cut(s) 20, 288, 747
ApeKI GCWGC 2 cut(s) 76, 556
ApoI RAATTY 3 cut(s) 240, 475, 720
Asp700I GAANNNNTTC 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 527, 730
BalI TGGCCA 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 799
BbvI GCAGC 2 cut(s) 88, 543
BccI CCATC 1 cut(s) 475
BceAI ACGGC 3 cut(s) 104, 584, 812
BciVI GTATCC 2 cut(s) 109, 478
BcoDI GTCTC 2 cut(s) 260, 396
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 2 cut(s) 74, 315
BfuI GTATCC 2 cut(s) 109, 478
BisI GCNGC 4 cut(s) 77, 210, 557, 777
BlsI GCNGC 4 cut(s) 78, 211, 558, 778
BmiI GGNNCC 1 cut(s) 548
BmsI GCATC 6 cut(s) 40, 139, 243, 619, 723, 808
BpiI GAAGAC 1 cut(s) 799
BplI GAGNNNNNCTC 4 cut(s) 10, 42, 257, 289
BpuEI CTTGAG 2 cut(s) 12, 679
Bsa29I ATCGAT 1 cut(s) 639
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 143, 353, 354, 449
Bse1I ACTGG 1 cut(s) 700
BseAI TCCGGA 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 5 cut(s) 32, 143, 353, 354, 449
BseMII CTCAG 2 cut(s) 271, 661
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 3 cut(s) 15, 79, 559
BseXI GCAGC 2 cut(s) 88, 543
BshFI GGCC 3 cut(s) 22, 290, 749
BshVI ATCGAT 1 cut(s) 639
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 5 cut(s) 32, 143, 353, 354, 449
BsmAI GTCTC 2 cut(s) 260, 396
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 3 cut(s) 22, 290, 749
Bsp13I TCCGGA 1 cut(s) 234
BspACI CCGC 4 cut(s) 207, 210, 774, 777
BspANI GGCC 3 cut(s) 22, 290, 749
BspCNI CTCAG 2 cut(s) 270, 660
BspDI ATCGAT 1 cut(s) 639
BspEI TCCGGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 548
BspMAI CTGCAG 1 cut(s) 78
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 400, 535
BstDEI CTNAG 2 cut(s) 257, 647
BstMAI GTCTC 2 cut(s) 260, 396
BstMWI GCNNNNNNNGC 1 cut(s) 773
BstSFI CTRYAG 2 cut(s) 74, 315
BstV1I GCAGC 2 cut(s) 88, 543
BstV2I GAAGAC 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 639
BsuI GTATCC 2 cut(s) 109, 478
BsuRI GGCC 3 cut(s) 22, 290, 749
BsuTUI ATCGAT 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 400, 535
ClaI ATCGAT 1 cut(s) 639
CviJI RGCY 8 cut(s) 22, 79, 219, 290, 502, 549, 699, 749
CviKI_1 RGCY 8 cut(s) 22, 79, 219, 290, 502, 549, 699, 749
DdeI CTNAG 2 cut(s) 257, 647
DraI TTTAAA 1 cut(s) 729
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaiI YATR 4 cut(s) 263, 371, 492, 684
FaqI GGGAC 1 cut(s) 329
Fnu4HI GCNGC 4 cut(s) 77, 210, 557, 777
Fsp4HI GCNGC 4 cut(s) 77, 210, 557, 777
FspBI CTAG 1 cut(s) 395
GluI GCNGC 4 cut(s) 77, 210, 557, 777
HaeIII GGCC 3 cut(s) 22, 290, 749
HapII CCGG 1 cut(s) 235
HincII GTYRAC 3 cut(s) 71, 103, 583
HindII GTYRAC 3 cut(s) 71, 103, 583
HinfI GANTC 8 cut(s) 67, 83, 199, 385, 463, 563, 636, 686
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 527, 730
Hpy166II GTNNAC 5 cut(s) 71, 103, 455, 518, 583
Hpy188I TCNGA 4 cut(s) 226, 249, 429, 706
Hpy188III TCNNGA 5 cut(s) 149, 169, 235, 629, 649
Hpy8I GTNNAC 5 cut(s) 71, 103, 455, 518, 583
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 5 cut(s) 53, 76, 334, 373, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 773
HpyF3I CTNAG 2 cut(s) 257, 647
HpySE526I ACGT 1 cut(s) 599
Kpn2I TCCGGA 1 cut(s) 234
LmnI GCTCC 1 cut(s) 546
Lsp1109I GCAGC 2 cut(s) 88, 543
LweI GCATC 6 cut(s) 40, 139, 243, 619, 723, 808
MaeI CTAG 1 cut(s) 395
MaeII ACGT 1 cut(s) 599
MboII GAAGA 9 cut(s) 125, 136, 262, 288, 585, 605, 681, 683, 799
MfeI CAATTG 3 cut(s) 45, 538, 551
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 76, 457
MmeI TCCRAC 3 cut(s) 13, 330, 810
Mox20I TGGCCA 1 cut(s) 290
MroI TCCGGA 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 594, 602, 728
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 1 cut(s) 235
MunI CAATTG 3 cut(s) 45, 538, 551
MwoI GCNNNNNNNGC 1 cut(s) 773
NlaIV GGNNCC 1 cut(s) 548
PceI AGGCCT 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 6 cut(s) 83, 199, 385, 563, 636, 686
PkrI GCNGC 4 cut(s) 78, 211, 558, 778
PleI GAGTC 2 cut(s) 75, 457
PpsI GAGTC 2 cut(s) 75, 457
PspN4I GGNNCC 1 cut(s) 548
PstI CTGCAG 1 cut(s) 78
SaqAI TTAA 3 cut(s) 594, 602, 728
SatI GCNGC 4 cut(s) 77, 210, 557, 777
SchI GAGTC 2 cut(s) 76, 457
SetI ASST 9 cut(s) 188, 322, 514, 602, 668, 714, 743, 772, 792
SfaNI GCATC 6 cut(s) 40, 139, 243, 619, 723, 808
SfcI CTRYAG 2 cut(s) 74, 315
SmlI CTYRAG 2 cut(s) 27, 694
SmoI CTYRAG 2 cut(s) 27, 694
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 4 cut(s) 207, 210, 774, 777
SspMI CTAG 1 cut(s) 395
StuI AGGCCT 1 cut(s) 22
StyI CCWWGG 1 cut(s) 352
TaiI ACGT 1 cut(s) 602
TaqI TCGA 1 cut(s) 639
TauI GCSGC 2 cut(s) 212, 779
TfiI GAWTC 6 cut(s) 83, 199, 385, 563, 636, 686
Tru1I TTAA 3 cut(s) 594, 602, 728
Tru9I TTAA 3 cut(s) 594, 602, 728
TscAI CASTG 1 cut(s) 628
TseI GCWGC 2 cut(s) 76, 556
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 3 cut(s) 128, 691, 730
TspRI CASTG 1 cut(s) 628
XapI RAATTY 3 cut(s) 240, 475, 720
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.