Rh5AG498900

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000315
Physical Location & Seq
Forward (+)
84570496 .. 84572916
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG498900.1

Sequence Viewer

Length: 567 bp
ATGGACATAAAAGCCCAGCCTATTCAGAAGCCCGCTAGGGGTACAATAGAAATCAAAAACAATATTCGGTCCAAACATAGAGGATTCATGTGGAATTATAGAAAAGAAAGTAAAGGTGACCAAGAAGTTAGTAAAGTCCACAGCAAAGTTCTTCTTCATTTGAGTCAGTCAACCTCTCTGTCTTTATCAGCCTCTCTCAAGATTTTGATGGATACCAATATCAACAGTGATCAGAGGCCTCCACAGGGTGGAGAAGCCCCAGATGACACCGGCAATTGGAGGATGTACTTGATGCCAGATTCAAGACAAAGAGTTGTCAACAAGATATTTGAAACGTTGAAGATGCATCTCCCCTTCTCTGGCCAAGAGGGGTTACTTGAACTGAAGAGAATTGGTTTAAGGTTTGAGGAAAAGGTGTATGCTACTGCATCAAGCCAGTCGGATTATCTACGAACCATTGCTCTGAAGATGCTTACCATTGAGGGCAAGGAAGTTGCAACCAGTCCCCCCTCCAACCTGAAACGGCATCGTGTCCTTGCTTTTGAAACAGAGTATCAAGTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

188

Amino Acids

21.48

Weight (kDa)

9.69

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 90 - 165 3e-26 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15790 AT1G15790 AT1G15790 AT1G15790 AT1G15790
fragaria_vesca FvH4_3g12350 FvH4_3g37483 FvH4_3g42320 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42330 FvH4_3g42361
malus_domestica MD03G1031600.v1.1 MD03G1031700.v1.1 MD03G1033500.v1.1 MD07G1261500.v1.1 MD11G1035800.v1.1
prunus_persica Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1 Prupe.6G027700_v2.0.a1
pyrus_communis pycom03g02570 pycom03g02580
rosa_chinensis RchiOBHm_Chr4g0419101 RchiOBHm_Chr5g0075711 RchiOBHm_Chr5g0075731 RchiOBHm_Chr5g0075781 RchiOBHm_Chr5g0075801 RchiOBHm_Chr5g0075811 RchiOBHm_Chr5g0075831 RchiOBHm_Chr5g0075841 RchiOBHm_Chr5g0075851 RchiOBHm_Chr5g0075861
rosa_laevigata RLG00000029834 RLG00000036588 RLG00000036591 RLG00000036592 RLG00000036594 RLG00000036595 RLG00000036597 RLG00000036647
rosa_multiflora Rmu_co8127406.1_g000001 Rmu_co8138284.1_g000001 Rmu_sc0002101.1_g000001 Rmu_sc0002101.1_g000006 Rmu_sc0002652.1_g000027 Rmu_sc0002652.1_g000029 Rmu_sc0008562.1_g000002 Rmu_sc0019599.1_g000001 Rmu_sc0019861.1_g000005 Rmu_sc0029317.1_g000001 Rmu_sc0031378.1_g000001 Rmu_ssc0000402.1_g000001
rosa_roxburghii Rroxscaffold_1G00005820 Rroxscaffold_1G00005830 Rroxscaffold_1G00005840 Rroxscaffold_1G00005850 Rroxscaffold_1G00005860 Rroxscaffold_1G00005870 Rroxscaffold_1G00005890 Rroxscaffold_5G00340930 Rroxscaffold_5G00343250 Rroxscaffold_5G00369260
rosa_rugosa Rorug05G0442200 Rorug05G0442300.1 Rorug05G0442400 Rorug05G0442500 Rorug05G0442600 Rorug05G0442700 Rorug05G0442900
rosa_samantha Rh1AG189900 Rh2DG257500 Rh5AG498900 Rh5AG499100 Rh5AG499400 Rh5AG499500 Rh5AG499600 Rh5AG499700 Rh5AG499900 Rh5AG506800 Rh5BG519900 Rh5BG520100 Rh5BG520400 Rh5BG520500 Rh5BG520600 Rh5BG520800 Rh5BG520900 Rh5BG521100 Rh5CG543900 Rh5CG544100 Rh5CG544400 Rh5CG544500 Rh5CG544600 Rh5CG544800 Rh5CG544900 Rh5CG545000 Rh5CG545200 Rh5DG532700 Rh5DG533100 Rh5DG533200 Rh5DG533400 Rh5DG533500 Rh5DG533600 Rh5DG533700
rosa_wichuraiana Rw5G046310 Rw5G046340 Rw5G046350 Rw5G046360 Rw5G046370 Rw5G046380 Rw5G046400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 404, 485
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 43, 287
AfiI CCNNNNNNNGG 5 cut(s) 38, 245, 248, 276, 359
AgsI TTSAA 5 cut(s) 303, 332, 340, 380, 545
AoxI GGCC 2 cut(s) 236, 361
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 363
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 539
BciVI GTATCC 1 cut(s) 205
BclI TGATCA 1 cut(s) 229
BfaI CTAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmsI GCATC 6 cut(s) 282, 333, 355, 437, 459, 535
BpuEI CTTGAG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 245, 248, 276, 359
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 436, 501
Bse3DI GCAATG 1 cut(s) 456
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 5 cut(s) 38, 245, 248, 276, 359
BseMI GCAATG 1 cut(s) 456
BseNI ACTGG 2 cut(s) 436, 501
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 2 cut(s) 238, 363
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 5 cut(s) 38, 245, 248, 276, 359
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 2 cut(s) 238, 363
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 238, 363
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 2 cut(s) 436, 501
BssAI RCCGGY 1 cut(s) 269
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 116
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 116
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 238, 363
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 42, 286
CviAII CATG 1 cut(s) 88
CviJI RGCY 8 cut(s) 14, 19, 31, 191, 238, 257, 363, 435
CviKI_1 RGCY 8 cut(s) 14, 19, 31, 191, 238, 257, 363, 435
CviQI GTAC 2 cut(s) 42, 286
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco147I AGGCCT 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 404, 485
Eco91I GGTNACC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 348
FaeI CATG 1 cut(s) 91
FaiI YATR 6 cut(s) 8, 78, 89, 99, 420, 565
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 489
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 40
FbaI TGATCA 1 cut(s) 229
FokI GGATG 1 cut(s) 295
FspBI CTAG 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 238, 363
HapII CCGG 1 cut(s) 270
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 2 cut(s) 171, 319
HindII GTYRAC 2 cut(s) 171, 319
HinfI GANTC 3 cut(s) 84, 163, 299
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 139, 171, 319
Hpy188I TCNGA 4 cut(s) 27, 234, 442, 465
Hpy188III TCNNGA 2 cut(s) 199, 303
Hpy8I GTNNAC 3 cut(s) 139, 171, 319
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 346, 428, 497
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 9 cut(s) 29, 230, 273, 283, 309, 345, 449, 514, 530
LweI GCATC 6 cut(s) 282, 333, 355, 437, 459, 535
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 116, 372
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 5 cut(s) 143, 146, 352, 397, 478
MfeI CAATTG 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 3 cut(s) 94, 274, 390
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 420, 537
Mox20I TGGCCA 1 cut(s) 363
Mph1103I ATGCAT 1 cut(s) 348
MscI TGGCCA 1 cut(s) 363
MseI TTAA 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 363
MspI CCGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 274
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 116
NsiI ATGCAT 1 cut(s) 348
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 2 cut(s) 84, 299
PflMI CCANNNNNTGG 1 cut(s) 248
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 69
RsaI GTAC 2 cut(s) 43, 287
RsaNI GTAC 2 cut(s) 42, 286
SaqAI TTAA 1 cut(s) 398
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 172
SetI ASST 6 cut(s) 118, 176, 338, 404, 417, 519
SfaNI GCATC 6 cut(s) 282, 333, 355, 437, 459, 535
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 94, 274, 390
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 1 cut(s) 33
SspI AATATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 36
StuI AGGCCT 1 cut(s) 238
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 338
TaqII GACCGA 1 cut(s) 57
TasI AATT 3 cut(s) 94, 274, 390
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 84, 299
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 76, 146
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 69
XspI CTAG 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.